PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01784.1.g00080.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 310aa    MW: 34656.9 Da    PI: 9.1282
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01784.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-144993147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r +WT++E+ l+++  +++G   W++I +++g  +t+ q++s+ qk+
  Zpz_sc01784.1.g00080.1.sm.mkhc 49 REKWTEDEHNLFLESLELHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 93
                                    789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.95E-154399IPR009057Homeodomain-like
PROSITE profilePS5129418.6044498IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-84695IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-144796IPR006447Myb domain, plants
SMARTSM007176.7E-124896IPR001005SANT/Myb domain
PfamPF002493.3E-124992IPR001005SANT/Myb domain
CDDcd001671.94E-95194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MARFQEFEVN CDVGREYHQK NPLNSTAMDL SAEERMPKAR KPYTISKQRE KWTEDEHNLF  60
LESLELHGRA WRRIQEHIGS KTAVQIRSHA QKFFSKVTRE ASGDGNGTAA APQIRIPPPR  120
PKRKPTHPYP RNLGNSPGKD TPSLKQLDKP RLQVVPSLYE QENGSPKSVL TTAQVVRSPA  180
SSVDAEDRYP APRIAAVEGA TQLPPYKAEQ PHYQPSQAAD CRFTSGEGSC TASVTTSGGV  240
PETPTWNSDS VESMQLINNE DEVIPVPGSR KCANPTPDRL QGFVPYKKWK MVQSKTPEVE  300
ANREMTRLCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01784.1.g00080.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652697.12e-75PREDICTED: uncharacterized protein LOC102715571
TrEMBLA0A0D9ZPS71e-75A0A0D9ZPS7_9ORYZ; Uncharacterized protein
STRINGOGLUM04G22920.12e-76(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-33MYB_related family protein