PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01727.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 499aa    MW: 54226.7 Da    PI: 9.3345
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01727.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-351552482103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF
  Zpz_sc01727.1.g00150.1.am.mk 155 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEF 226
                                   9********************6667*****************************************999.........*** PP

                                   EESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                   +++ F+kg+k+ll++i+r+k++
  Zpz_sc01727.1.g00150.1.am.mk 227 ANEFFRKGDKQLLCEIHRRKTS 248
                                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-36144240IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-58151245IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.26E-31152245IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-30155245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-19155178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-19194206IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340195219IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-19207219IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAEGWVKRGV KDAKILEKAR KTNGTDGWRK CHGWTLKAAA SQNFQSLSLK HPEADRQSDT  60
YSLPPPPPPR TLPEAGTHAT FAIRSHLLRF PSPSPGEDDR KGELKPRETF VHASAPVEEN  120
GGKDRERMER VERCGSWECD AAAQSAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS  180
TFVVWRPPEF ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGDKQLLC  240
EIHRRKTSSA STASPSPPPF FAPPHFPLFH PGVQHHHHQF VGDDGVVAAH GVSVGFPHPH  300
WREQHAATRL LALGAPATSP SSATDGGNGR AATAAVLMEE NERLRRSNTA LLQELAHMRK  360
LYNDIIYFVQ NHVRPVAPSP AAAAFLQGLG LQARNKPVGT ALNNSGGSTT SSSSLTIAEE  420
PSPPPQQLLD KESGSSAPTK LFGVQLTAAP GGAGTKRPPS PDEDQPPSSP ATKPRLVLES  480
ADLSLSTAPS AASSPASTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2115124817123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01727.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180015.11e-159heat stress transcription factor B-4c-like
SwissprotQ67U941e-157HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0M1Z41e-166A0A0E0M1Z4_ORYPU; Uncharacterized protein
STRINGOPUNC09G11010.11e-166(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-73heat shock transcription factor B4