PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01727.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 518aa    MW: 56095 Da    PI: 10.5249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01727.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07199239954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++ +L++l+P       +K++ a++L +A+ Y+k L
  Zpz_sc01727.1.g00120.1.am.mk 199 ARLRRERISKRIRTLQRLVPGG-----TKMDTASMLDEAILYVKFL 239
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.097190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12191252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-10192244No hitNo description
SuperFamilySSF474594.06E-13194251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-11196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-5200239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEKIKDRRRE WRDGREGAHG VVADMALAMT ACFGSRATES MEFDLLNSSP AAQFELMKTM  60
LQLEQFTALD QTLMAPMSPP ISPMQTPSTQ SHCFSPLPYM SSAMINSSSP DGQYAAAPAT  120
YPAAGPEVQL DYVLSPDADA AGALLGSSSS PSSPAAADAM REAIFHIAAL QPVEIDPEAV  180
RPPKRRNVRI SKDPQSVAAR LRRERISKRI RTLQRLVPGG TKMDTASMLD EAILYVKFLK  240
SQVQYLERAA AATHRGAALG AAYPALHAPW QYVVPHGDIP CMRYDLSSMA KMALSPVSVA  300
GRCRISSCSS KLDPGAQVCN RLCRALFRRR MHVAVSSTGL EHAGKEPLPD ARHVAAGHGR  360
GRRRHASQGR TRGPRAGERS VPEQDSREIL PWHAQAKVHA SVLVEGTEAK QEGTRPVQFS  420
SGDSVGTRTG KNSNVSAARR HQAGRPDGRR LIFPNLISVP FGFGRRDPLT HLSICLQIWL  480
AARGVTYEPR RISVAAPTKR RGTWAGSALA SQGGYSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185RPPKRR
2199204RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01727.1.g00120.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-123EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
GenBankKJ7269741e-123KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-36bHLH family protein