PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc01719.1.g00140.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 182aa MW: 18942.6 Da PI: 8.9124

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01719.1.g00140.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	83.7	2e-26	45	96	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v Y eCl+NhAa+ Ggh+vDGCgEf+p+ aa+l CaACgCHR+FHRr ++ Zpz_sc01719.1.g00140.1.sm.mk 45 GVYYLECLQNHAANAGGHVVDGCGEFLPA-----PAASLSCAACGCHRSFHRRAIAS 96 689***********************9.....5789*************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.8E-22	46	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-8	48	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.9E-23	48	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.5	48	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEALVDVKYR LALFRHGGVA NAKNKLGHPA AATAGGRAIE SAAAGVYYLE CLQNHAANAG 60 GHVVDGCGEF LPAPAASLSC AACGCHRSFH RRAIASHSTV VPPPRLLRDG WESESDYDDG 120 RPMSPLPAQA LARPFGCSLV PALTPGAPAT CRPPVPAVHQ GPVAVASSAS VRKRFRTKFS 180 PE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01719.1.g00140.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146009.1	1e-30	ZF-HD homeobox protein
TrEMBL	B7ZYN2	3e-29	B7ZYN2_MAIZE; Zinc-finger homeodomain protein 8
TrEMBL	K4JC44	3e-29	K4JC44_MAIZE; ZF-HD-type transcription factor (Fragment)
STRING	GRMZM2G438438_P01	6e-30	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36018	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	8e-16	zinc finger homeodomain 1