PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01712.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 640aa MW: 66858.2 Da PI: 6.3136

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01712.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.3	2.1e-88	283	639	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 v++L ++A+ ++gd+ a+++Larl+ + a +g+p+ R a+yf+eAL+ l+ + +a +p ++++++++ +l Zpz_sc01712.1.g00040.1.am.mk 283 VDQLAQAAKLAEAGDAFGAREILARLNYRfpaAPAAGTPLLRSAFYFKEALRLALSP----TGEAPAPPASTPYDVVLKLG 359 689***********************999455566**************99....888889999999**** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 a+k+fsevsP+l+f+hlt+ qa+l+++ g++++H++Dfd+++G QW++L+q+La+R +++ l++T+++sp+s++ el+ Zpz_sc01712.1.g00040.1.am.mk 360 AYKAFSEVSPVLQFAHLTCVQAVLDELGGATCIHVLDFDVGMGEQWASLMQELAQR-RPATALKVTALVSPASHHPLELQL 439 ***************************************************9.7889**************** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 ++e+L++fA+elgv f+f+v ++++l++ eL ++ + +++aV+l + ++ +r+++L+lvk+l +kvvv Zpz_sc01712.1.g00040.1.am.mk 440 IHENLSSFAHELGVLFQFDVY---NVDTLDPAELvAIASCDTVAVHLPVGSAHVA--------ARPAILRLVKRLGAKVVV 509 ***************95...889999999846677*******99998........6899********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 v++ +d+++ +F++++++ ++ +++l++sl+a ++++e+++k+Er+l+++ +++ v ++++ + Wr +++ Zpz_sc01712.1.g00040.1.am.mk 510 SVDHGCDRTELPFAAHLFQVFQSCVSLLESLDAV-GTDAETAAKIERFLVQPGVEQRVVGRHRA---GVDKPLPWRTVFTS 586 ***************************998.8999***************988887...7777889*** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aGF pvp s++a++qa++ll+kv+ g+rve++ g+l+l+W++ +LvsvSaWr Zpz_sc01712.1.g00040.1.am.mk 587 AGFVPVPASSFAESQAEALLKKVALMGFRVESRGGALCLYWQRGELVSVSAWR 639 **************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.186	256	619	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-86	283	639	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MLFAGSTREG HAGALLLQHQ QQQRQQGLDK VSGAGGLIWE PTSVLDHRHS PSPSPPTSAS 60 TLSSPLGSAT AGVAALAGPN AKNVSPPPVA GAWPGGAAVE DAAAAGGKEQ EWQLTPLDMG 120 LGAGEGWDPA GAVLPDAPAQ PGLGPDHTFL RWIIGGEDAS AGMMDPPVLE LDHAPSMVSS 180 SFGPNLAFAP AMEDTKPAPS FGHAPNFLLH HHQHHPQPHA AFFGSHPSFD AAAVPKRGHP 240 MAGAPAPKLP PFPGAVGPPA GGFVPALKPK AEVANDEAAA AAVDQLAQAA KLAEAGDAFG 300 AREILARLNY RFPAAPAAGT PLLRSAFYFK EALRLALSPT GEAPAPPAST PYDVVLKLGA 360 YKAFSEVSPV LQFAHLTCVQ AVLDELGGAT CIHVLDFDVG MGEQWASLMQ ELAQRRPATA 420 LKVTALVSPA SHHPLELQLI HENLSSFAHE LGVLFQFDVY NVDTLDPAEL VAIASCDTVA 480 VHLPVGSAHV AARPAILRLV KRLGAKVVVS VDHGCDRTEL PFAAHLFQVF QSCVSLLESL 540 DAVGTDAETA AKIERFLVQP GVEQRVVGRH RAGVDKPLPW RTVFTSAGFV PVPASSFAES 600 QAEALLKKVA LMGFRVESRG GALCLYWQRG ELVSVSAWRC

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MLFAGSTREG HAGALLLQHQ QQQRQQGLDK VSGAGGLIWE PTSVLDHRHS PSPSPPTSAS  60
TLSSPLGSAT AGVAALAGPN AKNVSPPPVA GAWPGGAAVE DAAAAGGKEQ EWQLTPLDMG  120
LGAGEGWDPA GAVLPDAPAQ PGLGPDHTFL RWIIGGEDAS AGMMDPPVLE LDHAPSMVSS  180
SFGPNLAFAP AMEDTKPAPS FGHAPNFLLH HHQHHPQPHA AFFGSHPSFD AAAVPKRGHP  240
MAGAPAPKLP PFPGAVGPPA GGFVPALKPK AEVANDEAAA AAVDQLAQAA KLAEAGDAFG  300
AREILARLNY RFPAAPAAGT PLLRSAFYFK EALRLALSPT GEAPAPPAST PYDVVLKLGA  360
YKAFSEVSPV LQFAHLTCVQ AVLDELGGAT CIHVLDFDVG MGEQWASLMQ ELAQRRPATA  420
LKVTALVSPA SHHPLELQLI HENLSSFAHE LGVLFQFDVY NVDTLDPAEL VAIASCDTVA  480
VHLPVGSAHV AARPAILRLV KRLGAKVVVS VDHGCDRTEL PFAAHLFQVF QSCVSLLESL  540
DAVGTDAETA AKIERFLVQP GVEQRVVGRH RAGVDKPLPW RTVFTSAGFV PVPASSFAES  600
QAEALLKKVA LMGFRVESRG GALCLYWQRG ELVSVSAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-30	314	639	32	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01712.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464970.1	0.0	scarecrow-like protein 6
TrEMBL	C5WSJ8	0.0	C5WSJ8_SORBI; Uncharacterized protein
STRING	Sb01g029650.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6723	29	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-86	GRAS family protein