PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01711.1.g00070.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 330aa MW: 35959.3 Da PI: 9.5771

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01711.1.g00070.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.3	3.8e-31	160	216	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF Zpz_sc01711.1.g00070.1.sm.mk 160 DAPIYVNAKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 216 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-34	158	219	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.3	159	219	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-23	162	184	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.8E-28	162	216	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	164	184	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.2E-23	193	216	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MMSFKSHEGF AALNQAANGG GAPLPWWAGP QLLYSEPAPL SPEETRRDGQ FQVVPGAQGS 60 PDPAPPSAKR AAPPEVLKFS VFQGNSEAGG KGDKAPDHST TIALQSPFSE YNGRFEIGLG 120 QSMVSPNYSS PDQCYGLLTT YAMRSMSGGR MLLPLNAPAD APIYVNAKQY EGILRRRRAR 180 AKAERENRLV KGRKPYLHES RHLHAMRRAR GSGGRFLNTK KEGNSKEMST NGGNKLAPLA 240 QPCPYSPRLE HGNNQRHCHS RSSASSGLSG SEVPRMYEHD DTDHYNSSIE HLRTPFFTPL 300 PSIMDGEHGV AAIPSFKWAA SDGCFELLKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	6e-18	160	218	2	61	HAPB protein
4g92_A	6e-18	160	218	2	61	HAPB protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01711.1.g00070.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796559.1	1e-141	nuclear transcription factor Y subunit A-10-like
Refseq	XP_025796560.1	1e-141	nuclear transcription factor Y subunit A-10-like
Refseq	XP_025796561.1	1e-141	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A0A9RWX3	1e-164	A0A0A9RWX3_ARUDO; Uncharacterized protein
STRING	Pavir.Ia01146.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	4e-24	nuclear factor Y, subunit A10