PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01707.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 498aa MW: 53833.8 Da PI: 9.8496

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01707.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.2	6.7e-37	222	276	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s+ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Zpz_sc01707.1.g00040.1.am.mk 222 PLPCPRCRSRNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 276 679**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-30	223	276	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	223	277	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	225	261	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	232	276	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MPQAGVRGCQ RRSGSRHARM TRPHPFAFPQ QQRNHTASRA KKRTSSAITH CYAQKLVVAR 60 GRREETTASR VSCPVAFIPR PNSPAFFRLL CAGSSVLQPP AAFLAWKVRM LSHVEMAPAA 120 GGFKLFGKVI TQCAAPAPPP GEPASRAAAF LRERADPDES DQPTVKREAC VDHDFEKQQQ 180 QQDQGVGGGG TESGESKAAH QSSRQQDTAE ARSAAAASSA PPLPCPRCRS RNTKFCYFNN 240 YNVNQPRHFC KDCHRYWTAG GALRNVPVGA GRRKNRPLGP VVAAVPGHHH QLQHHRAAAA 300 AGFVLGFPGN PTSPTSPVYA DRWPVCPDRR FAFAFGGIET GNLAEQLLLS THQCAAKGGR 360 GHCRKAPGGK PRALVVGCCT LGSLLDAGLQ DATDTEQAAR TVTWVGSAAC DFMSAAIMSG 420 NAAAAVLPLR TERERESWGQ WHGISSATTQ KDVRNYAVEN EDMWIGSHRS GRDMEAWITI 480 RCAQATAPDV DGWMSLFC

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MPQAGVRGCQ RRSGSRHARM TRPHPFAFPQ QQRNHTASRA KKRTSSAITH CYAQKLVVAR  60
GRREETTASR VSCPVAFIPR PNSPAFFRLL CAGSSVLQPP AAFLAWKVRM LSHVEMAPAA  120
GGFKLFGKVI TQCAAPAPPP GEPASRAAAF LRERADPDES DQPTVKREAC VDHDFEKQQQ  180
QQDQGVGGGG TESGESKAAH QSSRQQDTAE ARSAAAASSA PPLPCPRCRS RNTKFCYFNN  240
YNVNQPRHFC KDCHRYWTAG GALRNVPVGA GRRKNRPLGP VVAAVPGHHH QLQHHRAAAA  300
AGFVLGFPGN PTSPTSPVYA DRWPVCPDRR FAFAFGGIET GNLAEQLLLS THQCAAKGGR  360
GHCRKAPGGK PRALVVGCCT LGSLLDAGLQ DATDTEQAAR TVTWVGSAAC DFMSAAIMSG  420
NAAAAVLPLR TERERESWGQ WHGISSATTQ KDVRNYAVEN EDMWIGSHRS GRDMEAWITI  480
RCAQATAPDV DGWMSLFC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01707.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726998	2e-82	KJ726998.1 Zea mays clone pUT3970 C2C2-DOF transcription factor (DOF37) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	4e-27	Dof family protein