PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01703.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 519aa    MW: 57219.8 Da    PI: 10.4232
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01703.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-352723642103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Zpz_sc01703.1.g00150.1.am.mk 272 FLSKTYDLVTEPALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFHKVHADR---------WEFA 343
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+ F +++k+ll++i r++s+
  Zpz_sc01703.1.g00150.1.am.mk 344 HEDFLRDNKHLLKRIVRRRSS 364
                                   *****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-56268361IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.7E-38268361IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.65E-34268361IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-31272361IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16272295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16310322IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340311335IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16323335IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MFASSCHVSR TNCQPSRAVT TDGLVTPSLR AGSLQADPTT APATRAPSQL SLAATDTTRP  60
TRTPSQKYPV LSSPPSKTHR RSGVLARAFH PRYFYRPLPS AAPAHRLAVW PAAALPSGRN  120
PGRAPPRSLR TPAPPRVGVP PHAELTRTGA VHADRRQPRR TVCRFHPKPI NAPPAHPSPP  180
VSSSDTRAHL QPSHAAAMNP DRARSDAPDV PYPDASASME ALLVPKLEAE AALPLSLPGP  240
FVPLDQVMPA EPVPDPPRPL EALLQGPQLP PFLSKTYDLV TEPALDGVIS WGAAGNSFVV  300
WDPSTFARDV LPHHFKHNNF SSFVRQLNTY GFHKVHADRW EFAHEDFLRD NKHLLKRIVR  360
RRSSPTQQIS IQPASSSGDS SLDPELHTLR REKIALLQEV ARLKQEQSQT IEHMSTLNKR  420
LDTAEDRQKQ MISFLAKLLQ NPAFVRQLKL HREQKEIDSG RMKRKFLKHV PHGSIESGES  480
SSLHTGEGGS HFPASSHMAV QDDIADLQNF LLGDDDFNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2326436411123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01703.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.11e-174heat stress transcription factor A-3-like
SwissprotQ6H6Q71e-152HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A2S3GQ451e-173A0A2S3GQ45_9POAL; Uncharacterized protein
STRINGSi016943m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]