PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01676.1.g00200.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 339aa    MW: 36132.2 Da    PI: 7.4737
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01676.1.g00200.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575.2e-18114201186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75 
                                     +Wt+  +  L++a++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s++
  Zpz_sc01676.1.g00200.1.am.mkhc 114 EWTDGAIGSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAG--SGA 190
                                     5*************************************7765333445799***************99999998..688 PP

                        trihelix  76 sstcpyfdqle 86 
                                     +s++p+f+++e
  Zpz_sc01676.1.g00200.1.am.mkhc 191 TSHWPWFRKME 201
                                     889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-21112203No hitNo description
Gene3DG3DSA:3.40.1160.106.3E-7255300IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASCDDDFGL LADDAHPTPP PQPPTVQQPA PQLCFADAAA AASATTGPFV PAQEESNHHA  60
ERDKAAPSGK RGREEFNSDG GEYSSYINSS GGGGKKGRGG GGGGSSDYRK DREEWTDGAI  120
GSLLDAYTDR FEQLNRGNLR GRDWEDVAAA VTDGQGKTSG VKSVEQCKNK IDNLKKRYKV  180
ECQRLAGSGA TSHWPWFRKM EQIVGNSASP ASSKPLVTSD DDKARQMPQH SNKRYTVSCA  240
APPNVVGASR GNPFSNPRWK RVLLKIGGTA LAGEAPQNVD HKVIMLIARE VQVACHHGVQ  300
KLSSTVVIFN MLEPGNISRA ICGDQIGLGC VQGMETDGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKKGRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01676.1.g00200.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149602e-97AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-97CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668441.11e-135uncharacterized protein LOC100383551 isoform X1
TrEMBLA0A3L6PXU11e-134A0A3L6PXU1_PANMI; Uncharacterized protein
STRINGGRMZM2G002978_P021e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-63Trihelix family protein