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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc01676.1.g00200.1.am.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
Trihelix |
| Protein Properties |
Length: 339aa MW: 36132.2 Da PI: 7.4737 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01676.1.g00200.1.am.mkhc | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 57 | 5.2e-18 | 114 | 201 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75
+Wt+ + L++a++++ e+l+rg+l++ +We+v++++ ++ +s +qCk+k++nl+kryk + ++ + s++
Zpz_sc01676.1.g00200.1.am.mkhc 114 EWTDGAIGSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAG--SGA 190
5*************************************7765333445799***************99999998..688 PP
trihelix 76 sstcpyfdqle 86
+s++p+f+++e
Zpz_sc01676.1.g00200.1.am.mkhc 191 TSHWPWFRKME 201
889*******8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MASCDDDFGL LADDAHPTPP PQPPTVQQPA PQLCFADAAA AASATTGPFV PAQEESNHHA 60
ERDKAAPSGK RGREEFNSDG GEYSSYINSS GGGGKKGRGG GGGGSSDYRK DREEWTDGAI 120
GSLLDAYTDR FEQLNRGNLR GRDWEDVAAA VTDGQGKTSG VKSVEQCKNK IDNLKKRYKV 180
ECQRLAGSGA TSHWPWFRKM EQIVGNSASP ASSKPLVTSD DDKARQMPQH SNKRYTVSCA 240
APPNVVGASR GNPFSNPRWK RVLLKIGGTA LAGEAPQNVD HKVIMLIARE VQVACHHGVQ 300
KLSSTVVIFN MLEPGNISRA ICGDQIGLGC VQGMETDGI
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 92 | 100 | GGKKGRGGG |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP014960 | 2e-97 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 2e-97 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
