PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01670.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 10008.7 Da PI: 10.8086 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 22 | 70 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien++ rqvtfskRr g++KKA+EL +LCdaev +++fs+tg+lye++ Zpz_sc01670.1.g00050.1.am.mk 22 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSNTGHLYEFA 70 8***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-28 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-23 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.03 | 21 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-24 | 21 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-27 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-23 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-23 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MRLFPQHAVK EQPRKKANPP NRIENTTSRQ VTFSKRRSGL FKKAKELAIL CDAEVGLVVF 60 SNTGHLYEFA NTRFVLLVSS CFLAKLDV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01670.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821378.1 | 1e-24 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6Z6W2 | 2e-23 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A059ASX6 | 2e-25 | A0A059ASX6_EUCGR; Uncharacterized protein | ||||
STRING | VIT_00s0211g00150.t01 | 6e-26 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 9e-25 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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