PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01663.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 789aa    MW: 84716.7 Da    PI: 7.7739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01663.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.4e-05101123123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zpz_sc01663.1.g00030.1.am.mk 101 FVCEICHKGFQRDQNLQLHRRGH 123
                                   89******************988 PP
2zf-C2H211.70.00082217235523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dCg++Fsr++++++H   +
  Zpz_sc01663.1.g00030.1.am.mk 217 DCGTVFSRRDSFVTHRAFC 235
                                   9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-4100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-6100123No hitNo description
SMARTSM003550.046101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355140152182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4175207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-6182207No hitNo description
Gene3DG3DSA:3.40.50.18202.4E-37578692IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534747.47E-35579787IPR029058Alpha/Beta hydrolase fold
PfamPF005611.4E-14579684IPR000073Alpha/beta hydrolase fold-1
Gene3DG3DSA:3.40.50.18201.2E-14693787IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MSRAECTAGS LSSVSNTATQ VEEELLQQRP QRRYRVIKPF MGSPPAMGNG DDGDLQRITG  60
TSEPLAAPPA AKKKRSLPGT PDPSAEVIAL SPKTLTATNR FVCEICHKGF QRDQNLQLHR  120
RGHNLPWKLR QRAVGGGTAD GGGGGPPRKR VYVCPEASCV HHNPARALSD LTGIKKHYCR  180
KHGEKKWKCE RCAKRYAVQS DWKAHAKVCG TREYKCDCGT VFSRRDSFVT HRAFCDALAQ  240
ENSKLAQPVN MAATVASGLQ GNQAAHLHLE LQADDYLDAV EEDFVTNTTS WSPQLRLLPV  300
SDDVSNPLIL PSPLGMLSSL AARTGAPSPA AFPFSGSTNI GAMGLNGPPV HPTVGFASAS  360
MSATALLQKA AALGATTSSG FGPMLSPFGP VRDGFPSPVQ TQLVGFDVGD GPFPGQYYRG  420
GPMTRAIGLL MQGGLRVPDR PREDDKRVVD YMGVDDDQSL DMDPFLREAM GLGLTRPSRS  480
VRFWGNPNPS SVSYISEPRG AQASTGAGRG DFCVSGFEGC LTSLDDAVFL DVSLLEQATA  540
GRCERLVLVG HGKSSIDRAV SVSQRKIIAA VELVAPVKHF FLVHGLAHGA WCWYKVVAPL  600
RAAGHRVTAL DLAASGVHPA RIEEVASFED YSRPLLEAVA AATDGERLVL VGHSLGGLTV  660
ALAMERFPRK IAAAVFLAAS MPCVGKHMGV TIEEDLQLAK LLARPGSQYM EDPIMKDETL  720
LTDGNYGAVK RVFVIAMADS SMTEEMQRQM IELSPGAEVE EIAGADHMAM LSKPRELCDV  780
LIKIANKFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sty_A1e-5657878813266Methylketone synthase 1
3sty_B1e-5657878813266Methylketone synthase 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01663.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.11e-165protein indeterminate-domain 2-like
TrEMBLA0A2T7DBX21e-169A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-97C2H2 family protein