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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01663.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 23778.8 Da PI: 8.3262 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.6 | 2.3e-45 | 93 | 184 | 3 | 94 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 ++d++lPianv+rimk vlP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y++++ Zpz_sc01663.1.g00010.1.am.mk 93 AHDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDNYADTM 173 6899***************************************************************************** PP NF-YB 84 kvylkkyrele 94 + yl++yre e Zpz_sc01663.1.g00010.1.am.mk 174 RRYLQRYRESE 184 *********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-42 | 92 | 192 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.19E-33 | 95 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.9E-24 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.2E-15 | 125 | 143 | No hit | No description |
PRINTS | PR00615 | 9.2E-15 | 144 | 162 | No hit | No description |
PRINTS | PR00615 | 9.2E-15 | 163 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
LYYCASAREL SSSAVVSTLI RLDPRPRAVA LDAIIVAMRG PHGLSADVAR LGHPSITPSP 60 PQEKNAASLA APARASSSAS TEVDGGGGGM NSAHDNLLPI ANVGRIMKDV LPPQAKISKR 120 AKETIQECAT EFIGFVTGEA SERCRRERRK TINGDDICHA MRSLGLDNYA DTMRRYLQRY 180 RESEELAAAI NSSSGREIQI DVRDELSIFR GSEQRQDKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-37 | 94 | 182 | 4 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-37 | 94 | 182 | 4 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01663.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972332.1 | 9e-76 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O04027 | 1e-42 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A2T7DBX6 | 1e-76 | A0A2T7DBX6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03825.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 1e-44 | nuclear factor Y, subunit B4 |
Publications ? help Back to Top | |||
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