PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01638.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 398aa    MW: 44149.5 Da    PI: 10.5229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01638.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028362384323
                                   ET..TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                   C+  +Cgk+F + s L++H  +H
  Zpz_sc01638.1.g00010.1.am.mk 362 CSyeNCGKTFVDVSALRKHAHVH 384
                                   77779**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031404.5E-2741207IPR004158Protein of unknown function DUF247, plant
SuperFamilySSF576678.71E-7355396No hitNo description
Gene3DG3DSA:3.30.160.601.5E-13355386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.385360389IPR007087Zinc finger, C2H2
PROSITE patternPS000280362384IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAHRSSGRWR MSSAPPWRSS GRRRASRARR SVVRSCPWWN PRTAVELAEM GVKLAASKSK  60
MFGDMSVYKR RPGLSLSGEL SLAPLVLNEL TACWLTNVAA YEACLGATQA DNFAVSSYIS  120
LVALLINRKE EAQELRAKGI INSAFRDKAT LGFFKSLAPF LHVGHRYYQV FERLQEYKQE  180
RGVWIAVHRF LYKNIKTIVA LLSVAGVLAG LFKTILSVKH QGKAFSSGAP PLHPPTDGPQ  240
QREGEEREGT NPSRPSHPSR STAAKGASGM EYLPPAAAAG SGGYRQYYQQ QPHSQALRRA  300
PPRPAARWVK QWIPQDLAAS GGKCSLFKWV RADGHRSSKE NHKGLEAEAP KPEPTSEILF  360
LCSYENCGKT FVDVSALRKH AHVHGERQYI CQEPNCGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01638.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSb09g000700.13e-77(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3590322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-31C2H2 family protein