PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01629.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 228aa    MW: 23705.8 Da    PI: 7.878
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01629.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.1e-302105199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+
  Zpz_sc01629.1.g00060.1.sm.mkhc   2 SCNGCRVLRKGCSDACVLRPSIkwidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVS 80 
                                     6*********************9999888899*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     Ga+g++++++++l+q++ae++l++e
  Zpz_sc01629.1.g00060.1.sm.mkhc  81 GAIGLMWTGHWDLCQAAAEAVLRGE 105
                                     *******************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8051107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIKWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGH WDLCQAAAEA VLRGESLRAL SAIPATFTDR  120
DMAGLYGDVG VAASNSPEHS SSAPSRKRRA NNGQYVFAGK VDGCYQPPAA GLPQSCELNL  180
CLTPASPLAG DRRGSGGGAS DEYSATTTCE DAGGEAEAGA PTLLNLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01629.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-138AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-113LOB domain-containing protein 37
TrEMBLA0A3L6TGQ71e-115A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRINGSi037275m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-55LOB domain-containing protein 37