PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01611.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 451aa    MW: 49814.8 Da    PI: 10.8462
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01611.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.6e-31187237151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  Zpz_sc01611.1.g00030.1.am.mk 187 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 237
                                   79***********************************************86 PP
2K-box75.31.7e-2528435034100
                         K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                    +Rhl+Ge+Le+L+lkeLqqLeqqLe+slk+iRs+K++l+le+++elq+kek+lqeen+ L+k+l+e
  Zpz_sc01611.1.g00030.1.am.mk 284 HIRHLMGEELETLKLKELQQLEQQLESSLKHIRSRKSQLMLESVSELQRKEKSLQEENQVLQKELAE 350
                                   58*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-41179238IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207179239IPR002100Transcription factor, MADS-box
CDDcd002658.38E-38180239No hitNo description
SuperFamilySSF554554.06E-29180242IPR002100Transcription factor, MADS-box
PROSITE patternPS003500181235IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-31181201IPR002100Transcription factor, MADS-box
PfamPF003193.4E-25188235IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-31201216IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-31216237IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.303264354IPR002487Transcription factor, K-box
PfamPF014864.0E-22283348IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MRITRPAGGP VPVICFTLNL VREDSDRDPV VMGSWPTGAV VLSMDRLSRY PAWPTRHEPT  60
RDVRLASHAY VSWEGRRAQT GVGPAGPDTS PPPMAARQRS ALRPSLFVQY RPLSSSPDPL  120
RQQQAPDRGF KSSAPGTAAH PRPRPPVPSS ASSPPPAHHA RSGVSHVRLK GERARREKMG  180
RGKVQLKRIE NKINRQVTFS KRRSGLLKKA HEISVLCDAE VALIIFSTKG KLYEYATDSW  240
YALNSASISP LFQPPRLLAC CCSISRGVLC APRALCGERA PAAHIRHLMG EELETLKLKE  300
LQQLEQQLES SLKHIRSRKS QLMLESVSEL QRKEKSLQEE NQVLQKELAE KQKAQKQKAQ  360
LDHCQQPQTS SSSSPFMIRE APRSVNIRGR REGGRSSRAA AGSHWASTMD AEPSQRLTGS  420
GQQQVSDTLP HLARCSTPYV KSSTDSSSGL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19179237159MEF2C
5f28_B6e-19179237159MEF2C
5f28_C6e-19179237159MEF2C
5f28_D6e-19179237159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01611.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7929698e-94DQ792969.1 Eleusine indica fruitful-like MADS-box transcription factor (FUL1b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ10CQ11e-64MAD14_ORYSJ; MADS-box transcription factor 14
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]