 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zpz_sc01611.1.g00030.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 451aa MW: 49814.8 Da PI: 10.8462 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01611.1.g00030.1.am.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97.5 | 5.6e-31 | 187 | 237 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
Zpz_sc01611.1.g00030.1.am.mk 187 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 237
79***********************************************86 PP
|
| 2 | K-box | 75.3 | 1.7e-25 | 284 | 350 | 34 | 100 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+Rhl+Ge+Le+L+lkeLqqLeqqLe+slk+iRs+K++l+le+++elq+kek+lqeen+ L+k+l+e
Zpz_sc01611.1.g00030.1.am.mk 284 HIRHLMGEELETLKLKELQQLEQQLESSLKHIRSRKSQLMLESVSELQRKEKSLQEENQVLQKELAE 350
58*************************************************************9986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 5.2E-41 | 179 | 238 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.207 | 179 | 239 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.38E-38 | 180 | 239 | No hit | No description |
| SuperFamily | SSF55455 | 4.06E-29 | 180 | 242 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 181 | 235 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-31 | 181 | 201 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.4E-25 | 188 | 235 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-31 | 201 | 216 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.9E-31 | 216 | 237 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.303 | 264 | 354 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 4.0E-22 | 283 | 348 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MRITRPAGGP VPVICFTLNL VREDSDRDPV VMGSWPTGAV VLSMDRLSRY PAWPTRHEPT 60
RDVRLASHAY VSWEGRRAQT GVGPAGPDTS PPPMAARQRS ALRPSLFVQY RPLSSSPDPL 120
RQQQAPDRGF KSSAPGTAAH PRPRPPVPSS ASSPPPAHHA RSGVSHVRLK GERARREKMG 180
RGKVQLKRIE NKINRQVTFS KRRSGLLKKA HEISVLCDAE VALIIFSTKG KLYEYATDSW 240
YALNSASISP LFQPPRLLAC CCSISRGVLC APRALCGERA PAAHIRHLMG EELETLKLKE 300
LQQLEQQLES SLKHIRSRKS QLMLESVSEL QRKEKSLQEE NQVLQKELAE KQKAQKQKAQ 360
LDHCQQPQTS SSSSPFMIRE APRSVNIRGR REGGRSSRAA AGSHWASTMD AEPSQRLTGS 420
GQQQVSDTLP HLARCSTPYV KSSTDSSSGL P
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ792969 | 8e-94 | DQ792969.1 Eleusine indica fruitful-like MADS-box transcription factor (FUL1b) mRNA, partial cds. |
| Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes.
Plant Sci., 2000. 155(2): p. 115-122
[PMID:10814814] - Jang S,An K,Lee S,An G
Characterization of tobacco MADS-box genes involved in floral initiation.
Plant Cell Physiol., 2002. 43(2): p. 230-8
[PMID:11867703] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
Plant Physiol., 2007. 145(4): p. 1484-94
[PMID:17951465] - Li D, et al.
Functional characterization of rice OsDof12.
Planta, 2009. 229(6): p. 1159-69
[PMID:19198875] - Tanaka N, et al.
The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
Plant Cell, 2011. 23(6): p. 2143-54
[PMID:21705640] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
Plant Cell, 2012. 24(5): p. 1848-59
[PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice.
Plant Cell Rep., 2013. 32(9): p. 1455-63
[PMID:23689259] - Su L,Shan JX,Gao JP,Lin HX
OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
Mol Plant, 2016. 9(2): p. 233-244
[PMID:26537047] - Wu F, et al.
The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
Plant J., 2017. 89(2): p. 310-324
[PMID:27689766]
|
