PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01609.1.g00120.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 281aa MW: 30886.9 Da PI: 8.0269

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01609.1.g00120.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	109	2.2e-34	181	239	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe Zpz_sc01609.1.g00120.1.am.mkhc 181 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 239 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-38	166	241	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-30	173	241	IPR003657	WRKY domain
PROSITE profile	PS50811	38.297	176	241	IPR003657	WRKY domain
SMART	SM00774	6.5E-40	181	240	IPR003657	WRKY domain
Pfam	PF03106	4.2E-27	182	239	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MRLLEPPFRG VLGDMIIFAL FLLLGRPCAV YSVRSGRAVE PSPTTGTLRM AALINKSTHT 60 DMLPLPRDKS VGHHNHPKPQ PNRRLIAGAV PSSQGEERYD GITTADVQSA GMIEPVPGPA 120 SDDDIDVGGG RPYPVDDANE DDDLDSKRRK MESAGIDAAL MGKPNREPRV VVQTVSEVDI 180 LDDGYRWRKY GQKVVKGNPN PRSYYKCTHT GCPVRKHVER ASHDPKSVIT TYEGKHNHEV 240 PASKTASHEM STAPMKTAVH TINSNMPGLG VAWDFQECQY K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-37	172	242	8	78	Probable WRKY transcription factor 4
2lex_A	1e-37	172	242	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269\|PubMed:12953112, ECO:0000269\|PubMed:16167901}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01609.1.g00120.1.am.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by sugar. {ECO:0000269\|PubMed:12953112}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646743.1	1e-121	WRKY transcription factor SUSIBA2 isoform X2
Swissprot	Q6VWJ6	1e-116	WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBL	K9YHM8	1e-120	K9YHM8_ORYSJ; WRKYS2 transcription factor (Fragment)
STRING	OGLUM07G19920.1	1e-118	(Oryza glumipatula)
STRING	OB07G25880.1	1e-119	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6740	38	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	3e-61	WRKY family protein