PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01607.1.g00140.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 252aa MW: 27673.2 Da PI: 9.6177 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103 | 1.7e-32 | 102 | 159 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ Zpz_sc01607.1.g00140.1.sm.mkhc 102 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 159 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-34 | 86 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-29 | 94 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 96 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 101 | 160 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 102 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSVDASLDSQ GTSGVAGDGA AMLTPNSLGS LSSSDREGEG QPRRSKKGIR AKQAEDADAV 60 DQNDLEEGEN SMKANKPKKK AEKRQRQPRV AFLTKSEVDH LEDGYRWRKY GQKAVKNSPY 120 PRSYYRCTTP KCGVKKRVER SYQDPSTVIT TYEGQHTHHS PASLRAGGGH LFMPNAHTLP 180 PHLMPSAGFR ADLMSMMHPI SMGANPNMYL PSMLPPPPPP VPTSPAPPLH QSHFTDYALL 240 QDLFPSNMPN NP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-30 | 94 | 162 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-30 | 94 | 162 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01607.1.g00140.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147623.1 | 1e-127 | uncharacterized protein LOC100281232 | ||||
Swissprot | Q8VWJ2 | 8e-49 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A3L6F9V2 | 1e-126 | A0A3L6F9V2_MAIZE; Putative WRKY transcription factor 71 | ||||
STRING | AC198725.4_FGP009 | 1e-126 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-45 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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