PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01559.1.g00240.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 110aa    MW: 12246.5 Da    PI: 10.617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01559.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.21.4e-30959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Zpz_sc01559.1.g00240.1.am.mk  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFAS 59
                                  79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.679161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-32323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-29361IPR002100Transcription factor, MADS-box
CDDcd002651.72E-39359No hitNo description
PfamPF003194.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFST RGKLYEFASA  60
RCDLPNPLLY PFAHARPLAG FICLRRGESH LGFVAASLLV TVSLNFCVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19177175MEF2 CHIMERA
6byy_B4e-19177175MEF2 CHIMERA
6byy_C4e-19177175MEF2 CHIMERA
6byy_D4e-19177175MEF2 CHIMERA
6bz1_A4e-19177175MEF2 CHIMERA
6bz1_B4e-19177175MEF2 CHIMERA
6bz1_C4e-19177175MEF2 CHIMERA
6bz1_D4e-19177175MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01559.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033282e-75AB003328.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:S11905.
GenBankAC0986952e-75AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence.
GenBankAC2104752e-75AC210475.1 Oryza glaberrima clone OG_BBa0054O06, complete sequence.
GenBankAC2139152e-75AC213915.1 Oryza minuta clone OM__Ba0240A18, complete sequence.
GenBankAC2158142e-75AC215814.1 Oryza minuta clone OM__Ba0123B04, complete sequence.
GenBankAK0676412e-75AK067641.1 Oryza sativa Japonica Group cDNA clone:J013108C22, full insert sequence.
GenBankAK1049212e-75AK104921.1 Oryza sativa Japonica Group cDNA clone:001-047-H02, full insert sequence.
GenBankAP0149592e-75AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3324762e-75AY332476.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL20) mRNA, complete cds.
GenBankAY5519152e-75AY551915.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS210 mRNA, complete cds.
GenBankCT8291382e-75CT829138.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046P14, full insert sequence.
GenBankCT8300372e-75CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence.
GenBankCU4063792e-75CU406379.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S104H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579437.13e-34uncharacterized protein LOC100805260 isoform X1
RefseqXP_006579438.13e-34uncharacterized protein LOC100805260 isoform X1
RefseqXP_016189938.12e-34agamous-like MADS-box protein AGL19 isoform X1
RefseqXP_020977875.12e-34agamous-like MADS-box protein AGL19 isoform X3
RefseqXP_025629045.12e-34agamous-like MADS-box protein AGL19 isoform X1
RefseqXP_028231659.13e-34agamous-like MADS-box protein AGL19 isoform X1
RefseqXP_028231660.13e-34agamous-like MADS-box protein AGL19 isoform X1
SwissprotQ9XJ601e-34MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A444C7U91e-35A0A444C7U9_ENSVE; Uncharacterized protein
STRINGOBART03G01800.12e-34(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-35AGAMOUS-like 20
Publications ? help Back to Top
  1. Thomson MJ,Edwards JD,Septiningsih EM,Harrington SE,McCouch SR
    Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.
    Genetics, 2006. 172(4): p. 2501-14
    [PMID:16452146]
  2. Park SJ, et al.
    Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
    Plant J., 2008. 56(6): p. 1018-29
    [PMID:18774969]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Maas LF,McClung A,McCouch S
    Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
    Theor. Appl. Genet., 2010. 120(5): p. 895-908
    [PMID:19949767]
  5. Sun C, et al.
    The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice.
    Plant Cell, 2012. 24(8): p. 3235-47
    [PMID:22892321]
  6. Choi SC, et al.
    Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.
    Plant Physiol., 2014. 164(3): p. 1326-37
    [PMID:24420930]
  7. Núñez-López L,Aguirre-Cruz A,Barrera-Figueroa BE,Peña-Castro JM
    Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor.
    PeerJ, 2015. 3: p. e817
    [PMID:25780769]
  8. Jin J, et al.
    MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant Physiol., 2015. 168(4): p. 1275-85
    [PMID:25855537]
  9. Liu X, et al.
    Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
    Plant Cell Rep., 2016. 35(2): p. 357-68
    [PMID:26518431]
  10. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  11. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  12. Alter P, et al.
    Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1.
    Plant Physiol., 2016. 172(1): p. 389-404
    [PMID:27457125]