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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc01498.1.g00140.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
C2H2 |
| Protein Properties |
Length: 321aa MW: 35023.8 Da PI: 11.6567 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01498.1.g00140.1.am.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 10.9 | 0.0014 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cg++F + L H +H
Zpz_sc01498.1.g00140.1.am.mk 44 FQCRTCGRRFATFQALGGHRTSH 66
89*********999998888777 PP
|
| 2 | zf-C2H2 | 13.9 | 0.00016 | 97 | 117 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cg++F++ L H+r+H
Zpz_sc01498.1.g00140.1.am.mk 97 CNTCGTVFPTGQALGGHMRRH 117
********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MDHTTSRTTT NFLQLLSLSL SPASKSKVIL KGKTTRRVRL DGAFQCRTCG RRFATFQALG 60
GHRTSHKRPR VRADGLDLLL GARPGKASAA CRNVHLCNTC GTVFPTGQAL GGHMRRHRAA 120
EEFDAPALET ASSGLLEDGD DHDDEDIISE FKDQQYYTTT EDQRRTNTRT VILICCVRHA 180
AVVRNTHAKT TDMATAPTAP ADVLLRLLSP PPSNNTAITN RQQQQQGKSK TPRFLSLSLS 240
PASKVVAKGR STKRARPDGA FQCRTCGRRF ATFSARAPMA KPPRPKIVST GATPAAQRSP 300
RGRRSAGTCA GTGRPPRQRW Q
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134045 | 1e-39 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. |
| GenBank | AK062491 | 1e-39 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. |
| GenBank | AK105226 | 1e-39 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. |
| GenBank | AP014967 | 1e-39 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AY305866 | 1e-39 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. |
| GenBank | CP012619 | 1e-39 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
| GenBank | CT833322 | 1e-39 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
