PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01498.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 321aa MW: 35023.8 Da PI: 11.6567

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01498.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H Zpz_sc01498.1.g00140.1.am.mk 44 FQCRTCGRRFATFQALGGHRTSH 66 89*********999998888777 PP
2	zf-C2H2	13.9	0.00016	97	117	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg++F++ L H+r+H Zpz_sc01498.1.g00140.1.am.mk 97 CNTCGTVFPTGQALGGHMRRH 117 ********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.7E-9	43	68	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.699	44	71	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	44	66	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.17E-7	44	117	No hit	No description
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.4E-11	94	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.681	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDHTTSRTTT NFLQLLSLSL SPASKSKVIL KGKTTRRVRL DGAFQCRTCG RRFATFQALG 60 GHRTSHKRPR VRADGLDLLL GARPGKASAA CRNVHLCNTC GTVFPTGQAL GGHMRRHRAA 120 EEFDAPALET ASSGLLEDGD DHDDEDIISE FKDQQYYTTT EDQRRTNTRT VILICCVRHA 180 AVVRNTHAKT TDMATAPTAP ADVLLRLLSP PPSNNTAITN RQQQQQGKSK TPRFLSLSLS 240 PASKVVAKGR STKRARPDGA FQCRTCGRRF ATFSARAPMA KPPRPKIVST GATPAAQRSP 300 RGRRSAGTCA GTGRPPRQRW Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01498.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134045	1e-39	AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBank	AK062491	1e-39	AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBank	AK105226	1e-39	AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBank	AP014967	1e-39	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AY305866	1e-39	AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBank	CP012619	1e-39	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBank	CT833322	1e-39	CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6730	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	2e-20	C2H2 family protein