PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01486.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 395aa    MW: 43451.3 Da    PI: 7.2036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01486.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05219238120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C  C+k+F+r  n++ H+
  Zpz_sc01486.1.g00060.1.am.mk 219 FSCAVCNKTFNRFNNMQMHM 238
                                   89*****************9 PP
2zf-C2H213.50.00021309331123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y C  Cgk+F  + + ++H +++
  Zpz_sc01486.1.g00060.1.am.mk 309 YACRRCGKRFAVRGDWRTHEKNC 331
                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-5214240No hitNo description
PROSITE profilePS5015710.055219246IPR007087Zinc finger, C2H2
SMARTSM003550.64219241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-5219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM00355220272304IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6295329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-6295329No hitNo description
PROSITE profilePS501578.704309329IPR007087Zinc finger, C2H2
SMARTSM0035558309329IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRAPEFSSHE SWEESMQQEQ ADKRRCCSCW IDRATKPVPP PVMHSYRAMH PYSTHQYHHT  60
SLPSSKQGGE DNDDDQSMLR LSLWPPGHHH SMAASPACSS SPSIISTTSM TAATAASYPW  120
LNEQGHYSNG GGGGVMGSSS SSHGSFLFHE QQQQQEPDVS ISLSIAPPRS NASAVCGGGF  180
AAPAALPSTV TTVTPGGSQV PSQYWIPSAA EILVGSTQFS CAVCNKTFNR FNNMQMHMWG  240
HGSQYRKGSE SLRGAITVGT APPASLMRLP CYCCAEGCRN NIDHPRARPL KDFRTLQTHY  300
RRKHGARPYA CRRCGKRFAV RGDWRTHEKN CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH  360
APHIAESVAV EDDEDEDDDH EDADQMDEPS DMVVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01486.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460014.11e-167zinc finger protein WIP6
SwissprotQ9FX687e-99ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLC5X9191e-166C5X919_SORBI; Uncharacterized protein
STRINGSb02g020840.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-100C2H2-like zinc finger protein