PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01483.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 708aa    MW: 75135.6 Da    PI: 9.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01483.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13297347255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zpz_sc01483.1.g00070.1.am.mk 297 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 347
                                   789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.46E-14293351No hitNo description
SuperFamilySSF474593.79E-17295368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555295346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-11297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-13297358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12301352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MEPLEAPCFS DPYLVVDKGI FTTNESRPEW QRSQVDSSRG QWISSTHARP GAALLGIDAS  60
RRPACRPPSA LNASCTVTLL QPAAAGRRQG RAAARVARRP IQTASQAGAR ARGLRPQSLY  120
RYYAQGLSTS LSAVECVHGH RHAGKVFKTS VRALGSYLEP AHFSVHCTLF HFILPRPSSM  180
GDGGLCELLV DGRCDQLRHL SDAEDLFSIL ETWEECTKGG LGGPRGSAAV FNSQVDCTGG  240
GSSVADAGAA RPTSTTMGNS RRRSVVDEAK GGSAPVQKKQ KGTVAEPAPD DDDGAAKMSH  300
IAVERNRRKQ MNEHLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL RSLEAKKHRK  360
ACADQVLSPR PGTAAASPRA LLDMSSMPQI SRRVAVPISP RTPTRPGSPY YVPGCGGRPP  420
HPAAAYMMAT STQATTPTGS SSSCSSSHDQ QQQHYSPYLP TLDSIVTELA VHASAASRPI  480
LPDVKVEFAG PNLVLKTVSC RAPGQALKII AALESLSLEI LHVSVSTVDD TMVHSFTIKI  540
GVECELSAEE LVQEIQRTCP SGEPKPPPPS QPPRAAAKPR PLRLCPIAAP YLAASASGAP  600
TLKSRAGPYP ARRRQPPTLA PSPPSAAPCL AASASTAPPP KRTSPAAATP PPQLPAPPCY  660
PPPPPTDEDQ PPAHCCHRPL FGVICDESLS TSCLNPHPKL ASLRFISI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01483.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615852e-80BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268672e-80KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-148transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-149A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Aa02723.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-65bHLH family protein