PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01458.1.g00060.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 403aa MW: 43967.1 Da PI: 7.0576

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01458.1.g00060.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.7e-54	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdee+v++yL +k+ + +++ vi++vd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+sg Zpz_sc01458.1.g00060.1.am.mk 17 LPPGFRFHPTDEEVVSHYLIPKALSCLFTC-LVIADVDLNKCEPWELPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATASG 96 79**********************9999.78***********99999************************ PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdke+++ +g lvg+kktLvfy grap+g+kt Wvmheyr+ Zpz_sc01458.1.g00060.1.am.mk 97 YWKATGKDKEIFRGRGVLVGMKKTLVFYLGRAPHGKKTPWVMHEYRI 143 *******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	6	153	IPR003441	NAC domain
PROSITE profile	PS51005	54.021	17	209	IPR003441	NAC domain
Pfam	PF02365	6.0E-28	18	143	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-60	197	209	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSEVSEMHNQ GEEQLELPPG FRFHPTDEEV VSHYLIPKAL SCLFTCLVIA DVDLNKCEPW 60 ELPGKAKMGE KEWYFFCHKD RKYPTGTRTN RATASGYWKA TGKDKEIFRG RGVLVGMKKT 120 LVFYLGRAPH GKKTPWVMHE YRIEGRLPPN LPRAAKDGKG PDELPASLMP ARRRAWTTRG 180 RKRALTSSLM FFSTCCVQDE WAVCRVFNKE HLAAKPGLQQ TASTSSPAAA GTMQRSDSLA 240 FLDDLLDPAD LPPLTDSPFA DDFKGAAVPG SMSNMISGCQ QVKTEQPAPA QNPPPPALMQ 300 DTAYSYFSLP ATNNSTGGYS HHPQAAGAGH LSAIRRHCTA TAPALASPDI ARTPPYPELE 360 SLDDLGGFMD YSNISLAGEV VQAGTASVDP VVVGVCCLQI ILE

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSEVSEMHNQ GEEQLELPPG FRFHPTDEEV VSHYLIPKAL SCLFTCLVIA DVDLNKCEPW  60
ELPGKAKMGE KEWYFFCHKD RKYPTGTRTN RATASGYWKA TGKDKEIFRG RGVLVGMKKT  120
LVFYLGRAPH GKKTPWVMHE YRIEGRLPPN LPRAAKDGKG PDELPASLMP ARRRAWTTRG  180
RKRALTSSLM FFSTCCVQDE WAVCRVFNKE HLAAKPGLQQ TASTSSPAAA GTMQRSDSLA  240
FLDDLLDPAD LPPLTDSPFA DDFKGAAVPG SMSNMISGCQ QVKTEQPAPA QNPPPPALMQ  300
DTAYSYFSLP ATNNSTGGYS HHPQAAGAGH LSAIRRHCTA TAPALASPDI ARTPPYPELE  360
SLDDLGGFMD YSNISLAGEV VQAGTASVDP VVVGVCCLQI ILE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	14	215	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	14	215	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	14	215	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	14	215	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	14	215	17	174	NAC domain-containing protein 19
3swm_B	2e-50	14	215	17	174	NAC domain-containing protein 19
3swm_C	2e-50	14	215	17	174	NAC domain-containing protein 19
3swm_D	2e-50	14	215	17	174	NAC domain-containing protein 19
3swp_A	2e-50	14	215	17	174	NAC domain-containing protein 19
3swp_B	2e-50	14	215	17	174	NAC domain-containing protein 19
3swp_C	2e-50	14	215	17	174	NAC domain-containing protein 19
3swp_D	2e-50	14	215	17	174	NAC domain-containing protein 19
4dul_A	1e-50	14	215	14	171	NAC domain-containing protein 19
4dul_B	1e-50	14	215	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01458.1.g00060.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096183	1e-137	FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-112	NAC domain-containing protein 79
Swissprot	Q9FK44	6e-80	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0A9IAM4	1e-122	A0A0A9IAM4_ARUDO; Uncharacterized protein
STRING	Sb02g043270.1	1e-111	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-75	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]