PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01456.1.g00100.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 551aa    MW: 61572.2 Da    PI: 6.703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01456.1.g00100.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-18225313399
                                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                     kv   +  ++++ ++lp +fa++++g    s  +tl+++sg++W++++  +  ++++v+++GW+eFv +++++egD ++
  Zpz_sc01456.1.g00100.1.am.mkhc 225 KVV--AGDFTES-ISLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLL 297
                                     555..4444444.9*******888666..6779***************.3444455*********************** PP

                                     EEE-SSSEE..EEEEE-S CS
                              B3  82 Fkldgrsefelvvkvfrk 99 
                                     Fk++g s f   v vf++
  Zpz_sc01456.1.g00100.1.am.mkhc 298 FKYTGASAF--DVLVFDA 313
                                     ****99999..8888876 PP
2B339.21.2e-124585421499
                                     T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                              B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                                     ++ +l+ +fa++++g     ++++l+ +sg   W  ++i ++  ++ + ++GW +F ++ng+ e+D+++F++++  ++ 
  Zpz_sc01456.1.g00100.1.am.mkhc 458 CCAILSAEFATKFMGT--LRREIILRRSSGgGAWHARYICNRFARG-LCGRGWCSFTEDNGVVERDVCLFEVMQGaRRP 533
                                     6678899999999877..5568999996655*******86666655.7999********************99777999 PP

                                     ..EEEEE-S CS
                              B3  91 elvvkvfrk 99 
                                     +++v+v+rk
  Zpz_sc01456.1.g00100.1.am.mkhc 534 TMTVHVLRK 542
                                     99**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-23217316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-22219320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367220314IPR003340B3 DNA binding domain
CDDcd100171.67E-18221312No hitNo description
SMARTSM010191.8E-11223314IPR003340B3 DNA binding domain
PfamPF023624.2E-15224312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16430541IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-14431541IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-8434538No hitNo description
SMARTSM010190.14436543IPR003340B3 DNA binding domain
PfamPF023622.0E-10458542IPR003340B3 DNA binding domain
PROSITE profilePS508638.98461543IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
GTEVKNASDI LSPQPQWAVL GWQNGCMGPA AHFQREPSSE ENARTTPAWK GSISSICRSG  60
RGAPSPSEAT PGPQLWSLPS VSALYRAVCG HQHPATDLLE FCDYKMNTDH ERCTERAGFS  120
FWSDTNDRDK HFFKIMAAGF RERLTSETSP RKYRSFTWTP RAAKLKSPEL LPFHPSLLGF  180
HLEISFYLPT LQIMKNLDKK CRVCVEWQEH CYWSHMADEE KHFFKVVAGD FTESISLPSR  240
FANNFNGHIS EVVTLKSPSG KTWSIRVGSD DGDEVVFRSG WNEFVGEQRV EEGDCLLFKY  300
TGASAFDVLV FDASGCEKKT PPCVSQIRGC QQEEDGGDAQ LELEAAVHKN TGRSNASTTN  360
LPDGTEQDGW GWRACEVKEE EEDDVEILDG DGGAPATAAG YYFGNVGPVS EYRLTEEDRE  420
QISSVRVPAR PRNPVFVQVM HPSHVRGKKR GIVVSDPCCA ILSAEFATKF MGTLRREIIL  480
RRSSGGGAWH ARYICNRFAR GLCGRGWCSF TEDNGVVERD VCLFEVMQGA RRPTMTVHVL  540
RKVRGRYVPL S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01456.1.g00100.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.21e-138B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-102Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A368SJ491e-137A0A368SJ49_SETIT; Uncharacterized protein
STRINGPavir.Ib03973.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-31B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]