PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc01453.1.g00100.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 368aa MW: 39163.1 Da PI: 9.5868

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01453.1.g00100.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F ++ L H r H Zpz_sc01453.1.g00100.1.sm.mk 180 FRCNLCGRCFDSHQALGGHVRGH 202 89**************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.97E-5	178	205	No hit	No description
PROSITE profile	PS50157	10.616	180	207	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	202	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MAVGEDYHSC SDDSDDDVDR YEFLPRQPTD DPARRHAEEE ASDDDETGYE RVQDGGSRGK 60 RALTERDGRV EGSDASPWPK KARLGLITAC PSAAHQTPTS SSSGTDRTVS ASPHGALRDR 120 VSSWSEDETE SRRDGAHERP EPRKGKTNKS DTKMPLAGVT KSAKTTSPSS SAAASADGCF 180 RCNLCGRCFD SHQALGGHVR GHLQKAKIAS IAAEASLHDT SSRVARAAIA RKRLSTMQRV 240 AGISGRGGHM KQINKNKKPS VAAKDHRMGA HGGGGGGGGM NKRASMFEAS HEVVHDTYHT 300 REKAFSHRFH SSKDETAIGA GGHNDADVKN KKGAAAAVSV ATSTRGAGMY KCKVCGKSLP 360 RDWRSAGT

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MAVGEDYHSC SDDSDDDVDR YEFLPRQPTD DPARRHAEEE ASDDDETGYE RVQDGGSRGK  60
RALTERDGRV EGSDASPWPK KARLGLITAC PSAAHQTPTS SSSGTDRTVS ASPHGALRDR  120
VSSWSEDETE SRRDGAHERP EPRKGKTNKS DTKMPLAGVT KSAKTTSPSS SAAASADGCF  180
RCNLCGRCFD SHQALGGHVR GHLQKAKIAS IAAEASLHDT SSRVARAAIA RKRLSTMQRV  240
AGISGRGGHM KQINKNKKPS VAAKDHRMGA HGGGGGGGGM NKRASMFEAS HEVVHDTYHT  300
REKAFSHRFH SSKDETAIGA GGHNDADVKN KKGAAAAVSV ATSTRGAGMY KCKVCGKSLP  360
RDWRSAGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01453.1.g00100.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24421	2	2