PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 181aa MW: 20167.1 Da PI: 8.3886

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01433.1.g00130.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	58.6	1.6e-18	123	164	2	43
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfC 43 Cqv+gC+adls a++yh+rhkvCe+h++++vv ++g+e+rfC Zpz_sc01433.1.g00130.1.am.mkhc 123 CQVDGCQADLSGARDYHKRHKVCEAHTRSTVVRIKGVEHRFC 164 ****************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-20	115	165	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	15.349	120	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-18	121	165	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-15	123	165	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEAGFLRGEE NGDRTDAARM SGGNQNRSSE WSLNDWRWDT NLFLATPSSA APSECGGRDY 60 IRSQGEIDFG VVDKRRRVSP EDNSAECSNA AAANGENRSV QRGRSNEEER PRKGSSSSAP 120 PSCQVDGCQA DLSGARDYHK RHKVCEAHTR STVVRIKGVE HRFCFTFFKN LMKERRAAVH 180 V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01433.1.g00130.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819590.1	8e-75	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_025819591.1	8e-75	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_025819592.1	7e-75	squamosa promoter-binding-like protein 1 isoform X2
Refseq	XP_025819593.1	6e-75	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025819594.1	6e-75	squamosa promoter-binding-like protein 1 isoform X4
Swissprot	Q9LGU7	3e-60	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2S3HW29	1e-73	A0A2S3HW29_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DNE4	1e-73	A0A2T7DNE4_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SNB5	5e-75	A0A3L6SNB5_PANMI; Squamosa promoter-binding-like protein 1
STRING	Pavir.Eb01272.1.p	6e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	3e-20	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]