PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01412.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 782aa    MW: 84756.7 Da    PI: 10.4987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01412.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06646668123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++Cg+ F r  nL+ H r+H
  Zpz_sc01412.1.g00160.1.am.mk 646 YVCEICGQGFQRDQNLQMHRRRH 668
                                   9*********************9 PP
2zf-C2H210.90.0014725746223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C  C+k +  +s++k H++t+
  Zpz_sc01412.1.g00160.1.am.mk 725 ACARCSKAYAVHSDYKAHLKTC 746
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-5643669No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5645668IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635646668IPR007087Zinc finger, C2H2
SMARTSM003550.0032646668IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280648668IPR007087Zinc finger, C2H2
SMARTSM00355110688718IPR015880Zinc finger, C2H2-like
SMARTSM00355230724751IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MIDCCCGAEV YTTDHACMRS DRPGGLAWNN PQSERMTTAN GSIAGSHRYH NHFASIKRDQ  60
ACKPGQTLAL PGRSGITRGG ILWRASRTCV NPGEHPSLDR GERKPSNVCV TACNATCRSF  120
DIRKSKRAVN DIAGPCRPAN SSEVDGRRGA RPCTPRCLLS ALSATQTRIE TAPASGQRRS  180
ADAGARQRRV NAIDACGGGS APPAPVRQPG RIAPVSLLPS LDPRSRCAAP RVRGAGRGGE  240
ARTALEIGAG GAVPLLAACA RPPSLVESIG ARCGCVRSQH GDEKAWGAAT DLQPKAKRTQ  300
PNVQPSLRPC HTRPEEKVPR QNTPGPAQHA PDPRKMHAQV QQASRLPPGL LPHQLRAACL  360
RECMAPDLPG INPTTRDDPV CAAANSDNDK HQWAGVKESW RWPFPPRQLR EREARVCEAF  420
SGGGGKERCT SFSSPITAPS VATLKLSVVQ GAYGHPAVMR PCTSVALRHW WPRRRGLTVR  480
VPRVCRSASR ADQAVPFRLL THAWAVPELG AAGNYYAWAR SHLCQASRLI ALGAKGGCTS  540
GSVSQLDERP LLARFLPVGG EMTQALAGSF VARSRKNYVP PMLGFCAPAD GPPPDEATPE  600
PFRSLQIATT DATTTTKKKR RPAGTPDPDA EVVSLSPRTL LESDRYVCEI CGQGFQRDQN  660
LQMHRRRHKV PWKLLKRQAG EAARKRVFVC PEPSCLHHDP AHALGDLVGI KKHFRRKHSG  720
HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS RSVGATPGYF IVLLRFFPRA  780
CY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-12720761344Zinc finger protein JACKDAW
5b3h_F2e-12720761344Zinc finger protein JACKDAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1616620KKKRR
2616621KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01412.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4502633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.12e-83indeterminate(ID)-domain 14