PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01395.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 590aa    MW: 64230.1 Da    PI: 10.5722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01395.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.1e-121141783199
                                   .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                   +++ t  + ++ g++W+v +   + +++ +l++GW eF  a+g+ +g fvv++++g  ++ l+vk f++
  Zpz_sc01395.1.g00010.1.am.mk 114 TREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLVAHGIGVGWFVVLRHEG--GGALTVKSFDT 178
                                   4567899999**********..99999**************************765..67789998886 PP
2B333.47.9e-112012553896
                                   EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                            B3  38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                   l ++ g+ W++ l  +k ++++++++GW++F  ++g+ egD+v+++++g++ f  ++k+
  Zpz_sc01395.1.g00010.1.am.mk 201 LVSPFGKFWRIVL--DKDQSGVFFADGWSQFLTSHGISEGDIVLLRYEGNMVF--RFKA 255
                                   678899*******..*********************************99999..5555 PP
3B336.86.8e-122993562785
                                   ---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                            B3  27 ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                   g+   es t+tl++  +g rsW v    +   g+y l++GWk+F ++n+Lk+gD+++F ++
  Zpz_sc01395.1.g00010.1.am.mk 299 GLT--ESSTITLKTsINGaRSWPVCG-LTAANGSYHLGSGWKKFYEENKLKVGDICTFNVV 356
                                   555..45578888844447*****98.5777778************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.03772179IPR003340B3 DNA binding domain
PfamPF023622.0E-9115178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-11117181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-11117180IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-7121177No hitNo description
PROSITE profilePS508639.305126179IPR003340B3 DNA binding domain
SMARTSM010190.0015180259IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-13200264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926200259IPR003340B3 DNA binding domain
CDDcd100172.47E-8200256No hitNo description
Gene3DG3DSA:2.40.330.102.8E-11200259IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-8201253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-12276365IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-7294353No hitNo description
SuperFamilySSF1019363.14E-11297365IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-9299357IPR003340B3 DNA binding domain
PROSITE profilePS508639.939302369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MTPFVVSVIG RDRRDDFPGI SPAKLPCSST SPVAMASSGD PVALARIKQL KVLLPRSVHK  60
MVSTIAIAVD HGCQCNITGT KLISLPGFKR ISEELAGCFD VDGAASAGGG EDGTREATAL  120
VVSPFGKVWR VGVGRDGEGA FLGRGWAEFL VAHGIGVGWF VVLRHEGGGA LTVKSFDTSF  180
CIKDFGAPAA EYLNIFCISI LVSPFGKFWR IVLDKDQSGV FFADGWSQFL TSHGISEGDI  240
VLLRYEGNMV FRFKAFGLNG GQKDLKNQNT GVQQKILHNY TQGCNEQHQV MAGARSRIGL  300
TESSTITLKT SINGARSWPV CGLTAANGSY HLGSGWKKFY EENKLKVGDI CTFNVVKTLL  360
WRVDIALLHR GSHRPRRHPL LTSRSWPLTL LSGSSSVRGL LVPGRSFSVL PVQWGLARKR  420
GRILDSRSVS ALTTGEAGSG SSELRHIEKE LTFSPTFTDY VKIMESVKLD RSQNLQGVDS  480
DGRSSMKRFT SDGGRREGQR SGDARSKSFG RRRGPQMDRG SVRGRGSMKN VSQKNVTGHV  540
EKIAQGDAEN SRDRRGEVEE YIQKTIVRGD TRGTGGNRQF ASQLKAKDTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01395.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663074.14e-96putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A3L6GCJ21e-94A0A3L6GCJ2_MAIZE; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-08B3 family protein