PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01395.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 590aa MW: 64230.1 Da PI: 10.5722 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.2 | 5.1e-12 | 114 | 178 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ t + ++ g++W+v + + +++ +l++GW eF a+g+ +g fvv++++g ++ l+vk f++ Zpz_sc01395.1.g00010.1.am.mk 114 TREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLVAHGIGVGWFVVLRHEG--GGALTVKSFDT 178 4567899999**********..99999**************************765..67789998886 PP | |||||||
2 | B3 | 33.4 | 7.9e-11 | 201 | 255 | 38 | 96 |
EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l ++ g+ W++ l +k ++++++++GW++F ++g+ egD+v+++++g++ f ++k+ Zpz_sc01395.1.g00010.1.am.mk 201 LVSPFGKFWRIVL--DKDQSGVFFADGWSQFLTSHGISEGDIVLLRYEGNMVF--RFKA 255 678899*******..*********************************99999..5555 PP | |||||||
3 | B3 | 36.8 | 6.8e-12 | 299 | 356 | 27 | 85 |
---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 27 ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 g+ es t+tl++ +g rsW v + g+y l++GWk+F ++n+Lk+gD+++F ++ Zpz_sc01395.1.g00010.1.am.mk 299 GLT--ESSTITLKTsINGaRSWPVCG-LTAANGSYHLGSGWKKFYEENKLKVGDICTFNVV 356 555..45578888844447*****98.5777778************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.037 | 72 | 179 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 115 | 178 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.02E-11 | 117 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-11 | 117 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-7 | 121 | 177 | No hit | No description |
PROSITE profile | PS50863 | 9.305 | 126 | 179 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0015 | 180 | 259 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-13 | 200 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.926 | 200 | 259 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.47E-8 | 200 | 256 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-11 | 200 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.2E-8 | 201 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-12 | 276 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-7 | 294 | 353 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-11 | 297 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.7E-9 | 299 | 357 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.939 | 302 | 369 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MTPFVVSVIG RDRRDDFPGI SPAKLPCSST SPVAMASSGD PVALARIKQL KVLLPRSVHK 60 MVSTIAIAVD HGCQCNITGT KLISLPGFKR ISEELAGCFD VDGAASAGGG EDGTREATAL 120 VVSPFGKVWR VGVGRDGEGA FLGRGWAEFL VAHGIGVGWF VVLRHEGGGA LTVKSFDTSF 180 CIKDFGAPAA EYLNIFCISI LVSPFGKFWR IVLDKDQSGV FFADGWSQFL TSHGISEGDI 240 VLLRYEGNMV FRFKAFGLNG GQKDLKNQNT GVQQKILHNY TQGCNEQHQV MAGARSRIGL 300 TESSTITLKT SINGARSWPV CGLTAANGSY HLGSGWKKFY EENKLKVGDI CTFNVVKTLL 360 WRVDIALLHR GSHRPRRHPL LTSRSWPLTL LSGSSSVRGL LVPGRSFSVL PVQWGLARKR 420 GRILDSRSVS ALTTGEAGSG SSELRHIEKE LTFSPTFTDY VKIMESVKLD RSQNLQGVDS 480 DGRSSMKRFT SDGGRREGQR SGDARSKSFG RRRGPQMDRG SVRGRGSMKN VSQKNVTGHV 540 EKIAQGDAEN SRDRRGEVEE YIQKTIVRGD TRGTGGNRQF ASQLKAKDTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01395.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663074.1 | 4e-96 | putative B3 domain-containing protein Os04g0347400 isoform X1 | ||||
TrEMBL | A0A3L6GCJ2 | 1e-94 | A0A3L6GCJ2_MAIZE; Putative B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-08 | B3 family protein |