PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc01369.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 281aa MW: 30593 Da PI: 10.1994

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01369.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.9	3.4e-12	30	89	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRk 48 ek++sle+l++yFs+ +kdAA++Lg + L iCRq+GI+ W +R+ Zpz_sc01369.1.g00020.1.sm.mk 30 EKTVSLEELQRYFSGRMKDAARSLGamlmaetswikspLARQRLSAICRQLGISKWLFRQ 89 799*****************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.013	17	113	IPR003035	RWP-RK domain
Pfam	PF02042	8.1E-10	32	88	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-18	183	252	No hit	No description
SMART	SM00666	1.9E-17	185	278	IPR000270	PB1 domain
PROSITE profile	PS51745	16.66	185	260	IPR000270	PB1 domain
Pfam	PF00564	1.2E-13	186	260	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-21	186	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MANQRKVKIR NHKLAGGRGG GGRRWRKENE KTVSLEELQR YFSGRMKDAA RSLGAMLMAE 60 TSWIKSPLAR QRLSAICRQL GISKWLFRQN AKANDSLGKV KRIFESVPYS QQSMAAPAAS 120 HQAPAPAPAT VHDPPAALLP YLSSAVEVTS SQGSCQEPPP PPPPLPPRMS TAIRKKPFHA 180 GDTELVTVKA SYRGDIVRFR GPSSAGVEAV MGEVAKRLGL ETDAFDVKYL DDDNEWVLLS 240 CDTDFQECLQ VVPALSTASS SSGSGVAQPL VRLMVQEVLR N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	21	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01369.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	4e-79	protein NLP3-like
TrEMBL	A0A2S3GLE7	1e-77	A0A2S3GLE7_9POAL; Uncharacterized protein
STRING	Pavir.Aa03213.1.p	1e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-23	NIN like protein 7