PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01365.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 192aa    MW: 20756.8 Da    PI: 7.5299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01365.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000845173123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F++   L  H  +H
  Zpz_sc01365.1.g00070.1.sm.mk 51 FVCKTCNRAFPSFQALGGHRASH 73
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.1E-849115No hitNo description
SMARTSM003550.235173IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-125175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8065178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003554.893115IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-893117IPR007087Zinc finger, C2H2
PROSITE profilePS501578.64293123IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKRFAVQESE MARMLMLISH GQQDQQLPLR PLPLPLPAGA GRGDRAPERL FVCKTCNRAF  60
PSFQALGGHR ASHKKPRLDG DGGDLSLARP KMHGCSICGL EFAIGQALGG HMRRHRAMTG  120
GMPPAIVVDK KPDAINIHDD SVKQGLWLDL NHPPCDDGCD AEAECGHNAA TAGITFHQFL  180
DTGTMPVDCL GY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01365.1.g00070.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939213e-85AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085043e-85AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1089813e-85AK108981.1 Oryza sativa Japonica Group cDNA clone:002-153-F01, full insert sequence.
GenBankAP0149613e-85AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809105.11e-109zinc finger protein ZAT12-like
TrEMBLA0A2S3H7E01e-108A0A2S3H7E0_9POAL; Uncharacterized protein
STRINGSi023353m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-25C2H2 family protein