PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01352.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 390aa    MW: 42333.4 Da    PI: 5.7157
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01352.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.34.9e-33411522102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+Y ++++     ++ +        
  Zpz_sc01352.1.g00090.1.sm.mk  41 FLTKTYQLVDDPAVNDIISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYCYQQLFAALIDRIDpfrqqqgf 121
                                   9*************************************************************9988876655577776666 PP

                                   ...XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ...kekiweFkhksFkkgkkellekikrkks 102
                                       ++ weF+++ F++gkk+ll++i+r+k 
  Zpz_sc01352.1.g00090.1.sm.mk 122 rkiMPDRWEFANDCFQRGKKRLLCDIHRRKV 152
                                   64449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5037150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-3638150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.19E-3238150IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-3041150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-174164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-177991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-1792104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAAEQPAGEP SPPPLPSAHP PAPAERAPSP LASQRSVPTP FLTKTYQLVD DPAVNDIISW  60
NDDGSAFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYC YQQLFAALID RIDPFRQQQG  120
FRKIMPDRWE FANDCFQRGK KRLLCDIHRR KVTPSAAPTG AVTVAATPLP VALPVVSPAC  180
SGEEQVLSSS SSPEPPTRQQ PSGSGSGGAA SGDVGEENDR LRRENARLAR ELAQMKKLCN  240
NILLLMSKYA ATQQLDAAKA GNCSGESVEA APPPPPPLPP SILELMPSCP GAPAAAEPDA  300
GTTEEDEEEK MSARLFGVSI GRKRMRGDGD SDSGEEPFRH AAEVKPEPMD AQPPEQHRPH  360
HDEEPQAWPI YRPTPVRVGS GSDRSGSNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-222015315131Heat shock factor protein 1
5d5v_B6e-222015315131Heat shock factor protein 1
5d5v_D6e-222015315131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326GRKRMRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01352.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659656.11e-144PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-132HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLJ3MV031e-143J3MV03_ORYBR; Uncharacterized protein
STRINGOB08G29340.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-52HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]