PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01317.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 21717.2 Da PI: 5.8876 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.2 | 2e-09 | 52 | 98 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + + rr NReA r++R+++ka Lee+vk+L a N++L +l+ Zpz_sc01317.1.g00040.1.sm.mk 52 SSKPRRPLGNREAVRKYREKRKAHATFLEEEVKKLRATNQQLLRTLQ 98 556788899*********************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.9E-15 | 47 | 117 | No hit | No description |
SMART | SM00338 | 5.5E-8 | 48 | 116 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.646 | 51 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.1E-13 | 51 | 106 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.81E-7 | 55 | 99 | No hit | No description |
CDD | cd14686 | 2.18E-10 | 56 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MPDSFADFLS SSQTHICNPP STSAAMHTHT CLHTHSQAIA GGGEDAAPRE ESSKPRRPLG 60 NREAVRKYRE KRKAHATFLE EEVKKLRATN QQLLRTLQDH AALEAEAVRL RSLLLDVRGK 120 IDAEVGASPF PMQCSVGSVS VVGGDASALC FNGNSEVGGA WEESYTPAAA DRGSDEGGGM 180 SREIGISEVV PSMNVAAGAE FVTPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01317.1.g00040.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142351.1 | 8e-78 | uncharacterized protein LOC100274522 | ||||
Refseq | XP_020394445.1 | 8e-78 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_020394446.1 | 8e-78 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_020394447.1 | 8e-78 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_020394448.1 | 8e-78 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_020394449.1 | 8e-78 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q8GTS2 | 3e-39 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A0A9S3G7 | 3e-83 | A0A0A9S3G7_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G175870_P01 | 3e-77 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-41 | bZIP family protein |
Publications ? help Back to Top | |||
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