PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01297.1.g00100.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 236aa    MW: 26215.2 Da    PI: 5.1522
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01297.1.g00100.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-1092137242
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLter 42 
                                   r+R+++t+ ql++Le+ F + n +ps+ +++e+A++l    +++e+
  Zpz_sc01297.1.g00100.1.sm.mk  92 RQRWQPTPMQLQVLENIFDQgNGTPSKPKIKEIAAELshhgQISET 137
                                   89*****************99****************777777766 PP
2Wus_type_Homeobox58.91.2e-1991138249
             Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 
                                   +r+RW Ptp Q+++Le+++++G  tP+k +i++i+aeL+++G+i+++N
  Zpz_sc01297.1.g00100.1.sm.mk  91 TRQRWQPTPMQLQVLENIFDQGNGTPSKPKIKEIAAELSHHGQISETN 138
                                   689*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-686137IPR009057Homeodomain-like
SuperFamilySSF466893.17E-791131IPR009057Homeodomain-like
CDDcd000861.00E-492128No hitNo description
PfamPF000462.6E-892137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEWGDRGRAS GTATTVEESA GGGEPLGYVK VMTDEQVEVL RTQISVYATI CEQLVEMHRA  60
LTEHQDSISG MMFSDLYCDP LVVPGRHKIS TRQRWQPTPM QLQVLENIFD QGNGTPSKPK  120
IKEIAAELSH HGQISETNTA RSKRKQAASL PNNAESEAEA DEESLTDKKP KSDRPFLHNT  180
DRISEMHHFK TEQNQMGDMI YGSSDNLRSS GNPGQMSVYD NIVSNPSTFA GLYLVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01297.1.g00100.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456540.11e-116WUSCHEL-related homeobox 8
SwissprotQ5QMM33e-91WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1E5V6G71e-116A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRINGSb03g038080.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-47WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]