PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01296.1.g00170.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 430aa    MW: 44906.5 Da    PI: 5.497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01296.1.g00170.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05279301123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++Cgk Fs+   L  H+r+H
  Zpz_sc01296.1.g00170.1.sm.mk 279 HKCKKCGKEFSSGQALGGHMRKH 301
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-7231301No hitNo description
PfamPF139123.0E-5233255IPR007087Zinc finger, C2H2
SMARTSM003550.5233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785233260IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-5278303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321279306IPR007087Zinc finger, C2H2
PfamPF139124.0E-10279303IPR007087Zinc finger, C2H2
SMARTSM003550.0026279301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASSPNRRRR RADGDSGGLE EGEIVPSSST TSESSDAKND DNSDSLPSPP PPFYYPPEEN  60
TATGQAAMLP VPTPSSGRES DDTISDDGSS GRAANFGMGA GCSRGCDAES RGKGKAIASS  120
SSSDEQNRSV PAVVSGLNHP LEPMPLAFAT ADLLSSFDIA SVRPNFYVGE SSTSRQSTCN  180
EPAVAGPSDK ALVHQQPAAM QQKDQELDLE LRLAPPGPPE QAAPGPAAPP REYRCEICGR  240
SYLKYQQLGG HKTKHLNRGK KFEDGNANPT AACQDTQKHK CKKCGKEFSS GQALGGHMRK  300
HYEGEPIVVV RKSKKQCVEQ PAQPGPGVVP PTSLAHLAAV CVAELTLCLG LRIQTGQAPC  360
PSPPAPAVQE GSYIRPREGA PEVQEGTDKG PQVDAPAVQE GGSATTENSA AIGGQQRQDE  420
GADKSSTGSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298314RKHYEGEPIVVVRKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01296.1.g00170.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1852459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-14C2H2 family protein