 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc01264.1.g00180.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
TCP |
| Protein Properties |
Length: 274aa MW: 29125.6 Da PI: 7.5052 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01264.1.g00180.1.am.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 89.9 | 5.5e-28 | 54 | 124 | 3 | 73 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++
Zpz_sc01264.1.g00180.1.am.mk 54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPLQFPQQHAQ 124
78*************************************************************77776333 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MISGNHTNEE LAGCRKAEQP AVVDAGAAKS AAASSRPWPP STESRIVRVS RVFGGKDRHS 60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIDATQHEI DKLPPLQFPQ 120
QHAQDLVAHL QPTSMLTPFA SAAAEAAAAS SVLDGDKGGI KGLMGLNNSV SLGNGAMPLS 180
HGLHFAGESW TNGGSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFTM 240
KEASDQFPVD NLEHWQGQLS LNSARSFLHS GSQG
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036694 | 1e-113 | BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds. |
| GenBank | BT068942 | 1e-113 | BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds. |
| GenBank | BT069279 | 1e-113 | BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds. |
| GenBank | EU967877 | 1e-113 | EU967877.1 Zea mays clone 306784 hypothetical protein mRNA, complete cds. |
| GenBank | KJ726826 | 1e-113 | KJ726826.1 Zea mays clone pUT3365 TCP transcription factor (TCP7) mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G60970.1 | 2e-40 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
