PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc01253.1.g00070.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 173aa MW: 19217.1 Da PI: 6.9468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01253.1.g00070.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	65	86	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+++F++ + H+r+H Zpz_sc01253.1.g00070.1.sm.mk 65 SCPVCDRHFKTEKAVHGHMRSH 86 8********************9 PP
2	zf-C2H2	12.7	0.00038	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Zpz_sc01253.1.g00070.1.sm.mk 112 YSCEHCGSQFETRQALGGHRASH 134 99**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.85E-6	53	86	No hit	No description
PROSITE pattern	PS00028	0	64	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	64	86	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-6	66	86	IPR022755	Zinc finger, double-stranded RNA binding
SuperFamily	SSF57667	6.17E-5	109	138	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-4	111	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	112	139	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-6	112	135	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.066	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDGSTQVFFV GVAYGRLLSS VAGGSGGDEP RQPWHPSSVH EADSAPAQRK QRSTSSMEEG 60 QGPCSCPVCD RHFKTEKAVH GHMRSHPDRA WRGMEEPHPT DPTAMDEKQY RYSCEHCGSQ 120 FETRQALGGH RASHNGKQGC FRLSRQPTAM AAQPRHVLPF DLNDPAPEHR EEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01253.1.g00070.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439063.2	3e-51	zinc finger protein ZAT3
TrEMBL	A0A3L6ERH0	3e-49	A0A3L6ERH0_MAIZE; Uncharacterized protein
STRING	Pavir.J33608.1.p	6e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	2e-13	C2H2-like zinc finger protein