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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zpz_sc01251.1.g00010.1.am.mkhc |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
B3 |
Protein Properties |
Length: 350aa MW: 39122.7 Da PI: 6.8366 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc01251.1.g00010.1.am.mkhc | genome | ZGD | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 41 | 3.3e-13 | 244 | 328 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--T CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLke 76
k+lt+sdv + gr+vlpkk ae+ +++ + l++ d +W++k+++ ++ks++y+l+ eFvk +gL++
Zpz_sc01251.1.g00010.1.am.mkhc 244 KELTKSDVANVGRIVLPKKDAEASlpPLVQGDPLILQMDDmVLPITWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQA 321
899******************99999666666666777774455*******99888888888888.99*********** PP
T-EEEEE CS
B3 77 gDfvvFk 83
gD ++++
Zpz_sc01251.1.g00010.1.am.mkhc 322 GDALIIY 328
****998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MRTGHILCQS HKSSLSTGKE RERGEREREV GWAEVDEEEL VSCGRPHPFP FSPFKNHQEA 60 GMGQMGAGDG DGGGGHPHQY YYQALLAAMQ NPDQTLHPFS IPFYDGQGTD ASLPNAALHS 120 HIPRGFSDWS ASNSAFASLA GQPPATTNPP FSYNLSPSYA LWNHYPINKN EAYSYLAPTE 180 EHACTLHRTH RQDKESVRSN DEMEIRNSGE FHRETVGTLP ESKQVHDRCT TKFNSGEYQV 240 ILRKELTKSD VANVGRIVLP KKDAEASLPP LVQGDPLILQ MDDMVLPITW KFKYRFWPNN 300 KSRMYILEAA GEFVKTHGLQ AGDALIIYKN SIPGKFIIRG EKAIQQATNS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j9c_A | 2e-30 | 231 | 330 | 2 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-30 | 231 | 330 | 2 | 101 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT038952 | 1e-117 | BT038952.1 Zea mays full-length cDNA clone ZM_BFb0345D11 mRNA, complete cds. |
GenBank | JX428522 | 1e-117 | JX428522.1 Zea mays subsp. mays clone pUT3121 ABI47 ABI3VP1 type transcription factor mRNA, partial cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kobayashi T, et al.
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes. Plant J., 2009. 60(6): p. 948-61 [PMID:19737364] - Kobayashi T, et al.
The spatial expression and regulation of transcription factors IDEF1 and IDEF2. Ann. Bot., 2010. 105(7): p. 1109-17 [PMID:20197292] - Kobayashi T, et al.
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status. Plant J., 2012. 69(1): p. 81-91 [PMID:21880076] - Itai RN,Ogo Y,Kobayashi T,Nakanishi H,Nishizawa NK
Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots. Rice (N Y), 2013. 6(1): p. 16 [PMID:24280375] - Kobayashi T,Nishizawa NK
Iron sensors and signals in response to iron deficiency. Plant Sci., 2014. 224: p. 36-43 [PMID:24908504] - Kobayashi T,Nakanishi Itai R,Nishizawa NK
Iron deficiency responses in rice roots. Rice (N Y), 2014. 7(1): p. 27 [PMID:26224556] - Tan S, et al.
CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa. Sci Rep, 2016. 6: p. 25485 [PMID:27137867] - Kobayashi T, et al.
Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots. Plant Mol. Biol., 2016. 91(4-5): p. 533-47 [PMID:27143046]
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