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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01246.1.g00120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 20617.8 Da PI: 8.5153 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4e-13 | 114 | 178 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ t + ++ g++W+v + + +++ +l++GW eF a+g+ +g fvv++++g ++ l+vk f++ Zpz_sc01246.1.g00120.1.am.mk 114 AREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLAAHGIGVGWFVVLRHEG--GGALTVKSFDT 178 456789999***********..99999**************************765..77789998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 2.0E-10 | 115 | 178 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-12 | 117 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-12 | 117 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.39E-9 | 121 | 177 | No hit | No description |
PROSITE profile | PS50863 | 9.446 | 126 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MPPFVVAVIG RDRRDDFPGI SPAKLPCSST SPVAMASSGD PVAPARIKQL KVLLPRSVHK 60 MVSTIAIAVE HGCQCNITGT KLISLPGFKR ISEELAGCFD VDGAASAGGG EDGAREATAL 120 VVSPFGKVWR VGVGRDGEGA FLGRGWAEFL AAHGIGVGWF VVLRHEGGGA LTVKSFDTSF 180 CIKDFGAPAA GKHFAMAVI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01246.1.g00120.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447504.2 | 1e-45 | putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A3L6FY21 | 4e-48 | A0A3L6FY21_MAIZE; Putative B3 domain-containing protein | ||||
STRING | Sb06g002075.1 | 7e-46 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-09 | B3 family protein |