PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01238.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 438aa    MW: 47803.9 Da    PI: 8.1127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01238.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0584106123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zpz_sc01238.1.g00070.1.sm.mk  84 FVCEICNKGFQRDQNLQLHRRGH 106
                                   89*******************88 PP
2zf-C2H212.20.00057206228123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cgk++  +s+ k H + +
  Zpz_sc01238.1.g00070.1.sm.mk 206 WRCERCGKRYAVHSDWKAHVKGC 228
                                   58*****************9866 PP
3zf-C2H210.70.0017236254523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dCg  Fsrk++L++H   +
  Zpz_sc01238.1.g00070.1.sm.mk 236 DCGILFSRKDSLMTHRAFC 254
                                   8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.35E-883106No hitNo description
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PfamPF121716.8E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4194226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.35E-8201226No hitNo description
SMARTSM0035599206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLSDLSSDQE ATGSSSHGGD MASYVLSSPL FLAPAAATAL LPQPPPPEQP RAGAKRKRSQ  60
PGNPDPDAEV VALSPRTLVA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTAPSG  120
SGGGGRQQGE AAQPPRKRVY VCPEPTCVHH DPTRSIEKAC CSIETIKNEI LHASWYVIQL  180
TLMYRALGDL TGIKKHFSRK HGEKRWRCER CGKRYAVHSD WKAHVKGCGT KEYRCDCGIL  240
FSRKDSLMTH RAFCDALAEE SARLLAAAHH NSSTITSING GGSDNNNLLI TSNSTPLFLP  300
FSNPPSAADH NPNNPLFFLP QQEAPLLQQI HHSTYLDLPV VDATVSTAAS VTGDSVADTI  360
SFGLIPEGSV AALHAAGDVG QRRLTRDFLG VDHSEVEELQ LPLCATVPRV ASCATDLTRQ  420
YFVGERLPPV NNTWSNNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-32202271372Zinc finger protein JACKDAW
5b3h_F7e-32202271372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269|PubMed:18725639, ECO:0000269|PubMed:18774969, ECO:0000269|PubMed:18790997, ECO:0000269|PubMed:24280027, ECO:0000303|PubMed:19304997}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01238.1.g00070.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269|PubMed:25036785, ECO:0000269|PubMed:25573482, ECO:0000269|PubMed:25850808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0587576e-76AF058757.1 Zea mays zinc finger protein ID1 (id1) mRNA, complete cds.
GenBankBT0538026e-76BT053802.1 Zea mays full-length cDNA clone ZM_BFb0184E01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467214.21e-168protein indeterminate-domain 12
SwissprotB1B5341e-134EHD2_ORYSJ; Protein EARLY HEADING DATE 2
TrEMBLA0A1B6QKP81e-166A0A1B6QKP8_SORBI; Uncharacterized protein
STRINGTraes_6DS_DE865EA6D.11e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.14e-85indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Park SJ, et al.
    Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
    Plant J., 2008. 56(6): p. 1018-29
    [PMID:18774969]
  3. Song Y,Gao Z,Luan W
    Interaction between temperature and photoperiod in regulation of flowering time in rice.
    Sci China Life Sci, 2012. 55(3): p. 241-9
    [PMID:22527521]
  4. Hu S, et al.
    A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.
    Rice (N Y), 2013. 6(1): p. 24
    [PMID:24280027]
  5. Cai Y, et al.
    Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice.
    PLoS ONE, 2014. 9(7): p. e102529
    [PMID:25036785]
  6. Yoshitake Y, et al.
    The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.
    Sci Rep, 2015. 5: p. 7709
    [PMID:25573482]
  7. Han SH,Yoo SC,Lee BD,An G,Paek NC
    Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.
    Plant Cell Environ., 2015. 38(12): p. 2527-40
    [PMID:25850808]
  8. Jin J, et al.
    MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant Physiol., 2015. 168(4): p. 1275-85
    [PMID:25855537]
  9. Brambilla V,Gomez-Ariza J,Cerise M,Fornara F
    The Importance of Being on Time: Regulatory Networks Controlling Photoperiodic Flowering in Cereals.
    Front Plant Sci, 2017. 8: p. 665
    [PMID:28491078]