PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01235.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 488aa    MW: 53378.1 Da    PI: 12.0385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01235.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.47.7e-13253339186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ ++    
  Zpz_sc01235.1.g00100.1.am.mk 253 CWSEGETAALVDAWGSRYLELKRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS---- 329
                                   7*******************************************999999*********************999886.... PP

                      trihelix  75 ssstcpyfdqle 86 
                                     s ++++ ql+
  Zpz_sc01235.1.g00100.1.am.mk 330 --SPWAFYGQLD 339
                                   ..4688888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-23251339No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASRSGNPDL KQGQARENGA LLTSCRRSVR GEMLHCAPAT ASNLGLPGTA APRPRRQSSS  60
CPPLSARAAR TRRAPTERRP ADPIRAVPVP LRHEIGIHDS GFGTARKRAY PPTHPSRAVP  120
AGRPTEPRRR LLANPSPAPR PGQTHRRSIQ RRPLAHRSRP MHPERALPRA APRSSRPTAT  180
GRRGAPLPRR PSAVAPFFYC PHPHDLSRPV ASPAAHTTRP SVVVVGVRRG DLGGAMDGKL  240
PPPNPNLPYR EDCWSEGETA ALVDAWGSRY LELKRGSLRQ PQWREVADAV NSRPGASARR  300
RPPRTDIQCK NRVDTLKKKY KAERARGGSS PWAFYGQLDL LVGPTLSASG AGGGKRPSPP  360
RAVPMLRRRQ SPSRSPSPPM ALPLPNYGRG SNLPSAASGS GGFGELARAI ETFAEMYERM  420
ESAKQRHAEE MERQRIKFLK DLELKRMQAF VDMQLQLARA KHARKGDASS EMLMSLAALP  480
FLSAPSYL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01235.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617751e-138EU961775.1 Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.14e-71trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-118A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-41sequence-specific DNA binding transcription factors