PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01224.1.g00090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 237aa MW: 26297.3 Da PI: 7.4235 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.6 | 7.7e-40 | 75 | 134 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+++s Zpz_sc01224.1.g00090.1.sm.mk 75 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSRNS 134 7899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 61 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 77 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKVDMRHEKE VEEMEGKASQ GLENVGLDES ATLDHKKQDK EQINNAEDKA APELNGDNGK 60 TANDESGQEK TVKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 120 NVPVGAGRRK SRNSSLHYRQ LLMAPDCLMG SRVDISRSLH PEALASSSST QTLRIDDPDE 180 AAKSSIWTTL GIKPGDPGTF KPFQSKVESK SQETDAAPVL QANLAALSRS QSFQESS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01224.1.g00090.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565622.2 | 6e-82 | cyclic dof factor 2 | ||||
Refseq | XP_025815271.1 | 2e-81 | cyclic dof factor 2-like | ||||
TrEMBL | A0A1D8RJ04 | 2e-95 | A0A1D8RJ04_ELECO; DNA-binding with one finger protein 15 | ||||
STRING | BRADI2G09720.1 | 3e-81 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 4e-45 | cycling DOF factor 3 |