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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01211.1.g00130.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 579aa MW: 62293.2 Da PI: 10.3923 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 241 | 263 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F ++ L+ H + H Zpz_sc01211.1.g00130.1.sm.mk 241 TCHRCGERFGKWEALEAHHLSkH 263 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 242 | 263 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.12E-20 | 365 | 578 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.8E-9 | 390 | 552 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MGERRRRPSA AVAGDVRAEE EEKAAAPGNG APPTVWFALK KSLRCRSAPS EVHAPRPKAA 60 AAPSAGHLAS IVTKRAAPRS GCSRSIANLR DVIHGSKRHP GQPPSCSSPR SIGSSELLNP 120 IAHEVVLSTN ARCELKITGF GGLGAAGAAH DSDGDAVSSF VGTLRPGTPG PAWAAAAAGY 180 GLQRSGSCRG SSSIRCTPPR SPNLLMERNG SSVISAHRAS CEETASKSGG GNSKGSGGGP 240 TCHRCGERFG KWEALEAHHL SKHAGLTYIA SLFLHGLRNF SWWYRSHCPW IIHPARVVNG 300 GRWRKLVRAT STSVLRKYGF RAHRYVHPNT CFLRVRTCNF FSYCEPLLFR ILIDRFCVFS 360 FNRTAVTELM EGDSSRKIVE IICRTSLLKS ESSCVRIERV FKVHNTQRTL SRFEEHREAV 420 KLKASKLAKK HPRCLADGNE LLRFHGATIA CALGGAGGSS SSLCASDKCA VCRIIRHGFV 480 SSKKEAGAVG VFTTSTSGRA FESIDAPADD DLATTRKALL VCRVIAGRVH RPLDNLREIA 540 GQTGFDSLAG KVGPYSNIEE LYLLNPRALL PCFVVVCKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01211.1.g00130.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062500 | 0.0 | AK062500.1 Oryza sativa Japonica Group cDNA clone:001-104-A08, full insert sequence. | |||
GenBank | AK071014 | 0.0 | AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence. | |||
GenBank | AK104311 | 0.0 | AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence. | |||
GenBank | AP003406 | 0.0 | AP003406.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1070A12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A444F7H2 | 1e-169 | A0A444F7H2_ENSVE; Uncharacterized protein | ||||
STRING | OB01G42280.1 | 1e-120 | (Oryza brachyantha) | ||||
STRING | Sb03g036720.1 | 1e-120 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3277 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 2e-78 | C2H2 family protein |