![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01170.1.g00140.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 466aa MW: 47463.7 Da PI: 9.1569 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.7e-39 | 58 | 118 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Zpz_sc01170.1.g00140.1.am.mk 58 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPS 118 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 56 | 116 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-33 | 60 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 62 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 64 | 100 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 466 aa Download sequence Send to blast |
MEDMLMATNA AAANPSQGSA ANPPAPAPSS TPGSALRGGA PAAVAGAGSA ERRVRPQKEK 60 ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRPSSS 120 SASDSTSASV TSSSMASSAG VASKNPKLTQ DGAQDLNLAF PHHGGLKAPV DFAAFPSLES 180 SSVGGATTSN GRGGSSGSAV GAISAMELLR STGYYMPLQV PMQMPGDYAA AGFSFGEFRA 240 PPPPPPPSQN VFGFSLDAHG SAAGAAAAGY GSGTGLPGAP ENASRLLFPF EDLKPPVSSG 300 GGDGAGGASV GTGDENSGHH QFEHGKEQGG GGPGAGHDTP EAGVAACQRT LGSLGLGAVA 360 RVADLRGALV LLAASPALGP VRSILGLAVR PPVAARSRAV PWVTRSCREG HGRVARQLRR 420 LHEGRAARRA CSFDCDQSNN DYTAHLAAVC QCKHDRCYAD QRAPGD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01170.1.g00140.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001356786.1 | 1e-121 | dof zinc finger protein | ||||
Refseq | XP_020403354.1 | 1e-121 | dof zinc finger protein isoform X1 | ||||
Swissprot | Q9SXG8 | 1e-107 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | A0A0A9GUS7 | 1e-146 | A0A0A9GUS7_ARUDO; Uncharacterized protein | ||||
STRING | Si010443m | 1e-120 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-38 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|