PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01170.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 761aa    MW: 81296.7 Da    PI: 8.6416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01170.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-052850123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k F r  nL+ H r H
  Zpz_sc01170.1.g00030.1.am.mk 28 FVCEVCNKGFQREQNLQLHRRGH 50
                                  89*******************88 PP
2zf-C2H211.30.0011105127123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zpz_sc01170.1.g00030.1.am.mk 105 WKCDKCSKRYAVQSDWKAHSKIC 127
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-52750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-72750No hitNo description
PROSITE profilePS5015711.0942850IPR007087Zinc finger, C2H2
PfamPF121715.2E-52850IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00412850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-493126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-7100125No hitNo description
SMARTSM00355140105125IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSMSCLLPDP DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN  60
PLQVQRRRVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW  120
KAHSKICGTR EYRCDCGTVF SRVRVLFGLA ATWLWMALVL TGRDEKEENT PQHRGEEEAC  180
RAGELLAHGD MGPGRPCHAI PAESLRNWHA YLRDSFITHR AFCDALVQET ARLPPTGLSS  240
LTSQLYGATN AGNMALSLSQ VGSHFNSTLQ ARGMAGGSSI AARLDHLLSP SGASAFRPPP  300
PSAFFLNAGA GQDFGDDTGN GTHSFLQSKP FHGLMQLPDL QGNGAGGPGA SGPGLFNLGF  360
FANNGNSSGS SHEHASQGLM NNDQFSGGAG GGGGGGGSEA SAAGIFYGNY VGDGDHVPQA  420
GLFSDQAAGM LPQMSATALL QKAAQMGATS SPNGAASMFR GFAGTSPHIR PATPHMEQSD  480
ANLNDLMNSL AGSGVSAGGM FGGSNGGGGG AGMFDPRQLC DMEQEVKFGQ GGGDMTRDFL  540
GVGGGGIVRG ISTPRGDHQS SSDMSSLEAE MNSFRLSSRA CCRALGHAGS LRRTESEAWV  600
NGQENSDEDK SGSIRLLHVH LSAARECSDG PFARFNSLVG HLAVATPQSY AWLSSSTPCG  660
RQRWSLAPPL AFLSAVFRMV CVALTNYGDG DRQEQPPQKV EICRRKSGCR FPLILGRKGW  720
RGRGCATTIR LPLLSLIFCV CVKVKSTYQK YSCSPERLAK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-20101142344Zinc finger protein JACKDAW
5b3h_F2e-20101142344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385397SGGAGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01170.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A1D6E3190.0A0A1D6E319_MAIZE; Naked endosperm1
STRINGGRMZM2G129261_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-84indeterminate(ID)-domain 2