PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01167.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 909aa MW: 100102 Da PI: 7.0381

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01167.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.3	1.3e-20	323	419	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++ + +kk++W+ vs +m +rgf +sp+qC++k+++lnkryk+++e+ + Zpz_sc01167.1.g00010.1.am.mk 323 KWTSNMVKLLVSAVSYIDEDVEVDHgsgsgrrkhamlKKKGKWKLVSMAMNKRGFAVSPQQCEDKFNDLNKRYKRLTEILG 403 7************9999999764456677889999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zpz_sc01167.1.g00010.1.am.mk 404 RGrACEIVEKPALLEK 419 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-19	321	446	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MGPPPRRKVR WIPSEKRRPS TAARHFSPAS AISSVRRRCR HRSSHSHLRA GATTRRAGAY 60 VHLRVVRGAH TPDSPLRPNA PHRTPPAPRH RQLGSTSSSS RPRRSRFITF LVRLVPLPPT 120 NRARAQRREG KEEKAKRNHE VLFLGMVMTP ARFSLLVDSV SFAVENGGFR SCRAAAADCQ 180 RQQQSTFFQT KAVIFGCFGP SGQKSRPETP QNVQRLSGEK LGDWGGLLRP RGGCLSPEME 240 GDLPPRALIP GSPFDLEPSM QQQQQQLHFA QPHVHQGVFA VPANPVQELG NVVKTSLSDE 300 EDADDGHHDH GKAAAASQWH RVKWTSNMVK LLVSAVSYID EDVEVDHGSG SGRRKHAMLK 360 KKGKWKLVSM AMNKRGFAVS PQQCEDKFND LNKRYKRLTE ILGRGRACEI VEKPALLEKI 420 SLSAKLKEEA KKHLNSKHLH YEEMCSYHNR NRFCLLDDPA LQKSLRMALR SGDEEGRKNS 480 FGYEDEDDHA LFSDEDDEDD ECNDYLEVSA EDRHHRVHST KKLKHDHEET HCGSHLSEVA 540 AFDMNKMLSE GSGGAASEKN RSGMHSNQIE QERLKIKSQM LKIEQRHLKW LRFSKEKDRE 600 LEKMRLENEK MALENERMEL ELKLKEIEMG IKPKRIVLGA LSGLPGEEPD ETPDPALQMP 660 SSTQSSFDSR CLFLQCLGNV DTSCLQAPAM GACATKSGDL KNVKGEPPLV VEDAVAPRVA 720 EGEKAKADGV PVAAETTDPA DVSRRRSLSD LLKEVRGHTT RFPFLDSYPK TSFFGTGATV 780 LLTISVQDAE ASDEEAGQDA VKVVAEDSVV ATDVAAGAPE SVSEEAEVAK APPVAVQPSD 840 AVVEQDAAAE QPTDGSKTGQ EPSDEAQEAE EEKRVDPDSV QIASVAAAAD ATVAAPSTEG 900 SEVADGASA

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MGPPPRRKVR WIPSEKRRPS TAARHFSPAS AISSVRRRCR HRSSHSHLRA GATTRRAGAY  60
VHLRVVRGAH TPDSPLRPNA PHRTPPAPRH RQLGSTSSSS RPRRSRFITF LVRLVPLPPT  120
NRARAQRREG KEEKAKRNHE VLFLGMVMTP ARFSLLVDSV SFAVENGGFR SCRAAAADCQ  180
RQQQSTFFQT KAVIFGCFGP SGQKSRPETP QNVQRLSGEK LGDWGGLLRP RGGCLSPEME  240
GDLPPRALIP GSPFDLEPSM QQQQQQLHFA QPHVHQGVFA VPANPVQELG NVVKTSLSDE  300
EDADDGHHDH GKAAAASQWH RVKWTSNMVK LLVSAVSYID EDVEVDHGSG SGRRKHAMLK  360
KKGKWKLVSM AMNKRGFAVS PQQCEDKFND LNKRYKRLTE ILGRGRACEI VEKPALLEKI  420
SLSAKLKEEA KKHLNSKHLH YEEMCSYHNR NRFCLLDDPA LQKSLRMALR SGDEEGRKNS  480
FGYEDEDDHA LFSDEDDEDD ECNDYLEVSA EDRHHRVHST KKLKHDHEET HCGSHLSEVA  540
AFDMNKMLSE GSGGAASEKN RSGMHSNQIE QERLKIKSQM LKIEQRHLKW LRFSKEKDRE  600
LEKMRLENEK MALENERMEL ELKLKEIEMG IKPKRIVLGA LSGLPGEEPD ETPDPALQMP  660
SSTQSSFDSR CLFLQCLGNV DTSCLQAPAM GACATKSGDL KNVKGEPPLV VEDAVAPRVA  720
EGEKAKADGV PVAAETTDPA DVSRRRSLSD LLKEVRGHTT RFPFLDSYPK TSFFGTGATV  780
LLTISVQDAE ASDEEAGQDA VKVVAEDSVV ATDVAAGAPE SVSEEAEVAK APPVAVQPSD  840
AVVEQDAAAE QPTDGSKTGQ EPSDEAQEAE EEKRVDPDSV QIASVAAAAD ATVAAPSTEG  900
SEVADGASA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01167.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-64	sequence-specific DNA binding transcription factors