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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zpz_sc01162.1.g00070.1.am.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
B3 |
Protein Properties |
Length: 229aa MW: 25735.4 Da PI: 5.5976 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc01162.1.g00070.1.am.mk | genome | ZGD | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 85.6 | 4.4e-27 | 43 | 132 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
f+kvltpsdv+k++rlv+pk++ae++ + ++++l +ed+ g W+++++y+++s++yv+tkGW+ Fv+a +L +gD+v
Zpz_sc01162.1.g00070.1.am.mk 43 FDKVLTPSDVGKLNRLVVPKQHAERFFPEAGNGTQLCFEDRAGAPWRFRYSYWGSSQSYVMTKGWSLFVRAARLAAGDTVS 123
89************************666678889********************************************** PP
EEE-SSSEE.. CS
B3 82 Fkldgrsefel 92
F++ ++++
Zpz_sc01162.1.g00070.1.am.mk 124 FSR--GAGGRY 132
*93..345555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MRMDLSLGTL VEATREVQEE HQADLGHQDR RQHGDAAERE HMFDKVLTPS DVGKLNRLVV 60 PKQHAERFFP EAGNGTQLCF EDRAGAPWRF RYSYWGSSQS YVMTKGWSLF VRAARLAAGD 120 TVSFSRGAGG RYFIDYRHCQ RRRQEISFGD TAAMPAWPWV QRTSSMTGGE GASATNPVLV 180 DTGPPGTRHH DAEVGPSRAK CFRLFGFNVE CSRDDDAAME DEEDVDDDN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-43 | 37 | 137 | 2 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-43 | 37 | 137 | 2 | 111 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004698 | 1e-102 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. |
GenBank | AP014964 | 1e-102 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 1e-102 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |