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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01154.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 563aa MW: 60382.7 Da PI: 10.1353 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.6 | 1.9e-14 | 19 | 67 | 37 | 87 |
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k++e+g++rs+k+Ckek+en+ k+yk++ke++ +r ++ +t+++f+qlea Zpz_sc01154.1.g00210.1.am.mk 19 KLAEQGYNRSAKKCKEKFENVVKYYKRTKESRAGR--NDGKTYRFFTQLEA 67 789******************************97..56668*******85 PP | |||||||
2 | trihelix | 109 | 3e-34 | 351 | 436 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e s+tcpy Zpz_sc01154.1.g00210.1.am.mk 351 RWPKAEVHALIQLRSNLDTRYQDAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEGSKTCPY 430 8*********************************************************************8.99999**** PP trihelix 82 fdqlea 87 f+ql+a Zpz_sc01154.1.g00210.1.am.mk 431 FHQLDA 436 ****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.4E-10 | 18 | 68 | No hit | No description |
PROSITE profile | PS50090 | 7.166 | 344 | 408 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0051 | 348 | 410 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 349 | 407 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.6E-24 | 350 | 437 | No hit | No description |
CDD | cd12203 | 5.09E-29 | 351 | 415 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MWESNCGAAG GARTPLIRKL AEQGYNRSAK KCKEKFENVV KYYKRTKESR AGRNDGKTYR 60 FFTQLEALHA TGSPASAAPS PATSFAPPST TVGVSGPLPV RAPAEPPPSV SAGAGAGMLP 120 TMGNVSFSTS NTEDYSDDDD SDDEGTQELG GGADERGKRK RLSEGAAAAG GSGGGKMMRF 180 FEGLMKQVLE RQEVMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILAQERAMAA 240 SRDAAVLSFI QKITGQTIPM PSIAAPAINV MPPPASHPPP QPHPMPAVSA PPSGSHTPPP 300 QPKPSPQPQK SPAPATPTQQ QPSDIVMMPA DAPHADTPGH DGSGGGASSS RWPKAEVHAL 360 IQLRSNLDTR YQDAGPKGPL WEEISAGMRR LGYNRNAKRC KEKWENINKY FKKVKESNKK 420 RPEGSKTCPY FHQLDALYRN KALSSSGRGA AVHAHASSAP QETVKVTAAA AISQTPPPPS 480 QPSQSSQHAA KTGKGKGGSA ASEHGSSGST NGSVAGAKKT EDMMKETMEH RQPEPQQHDG 540 NNHRIIHGLG PVIDRPGIKH SLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01154.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061205 | 1e-135 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794483.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Refseq | XP_025794484.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | A0A2S3IKR8 | 0.0 | A0A2S3IKR8_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G414159_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-50 | Trihelix family protein |