PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01146.1.g00270.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 17726 Da PI: 10.3177 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00083 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Zpz_sc01146.1.g00270.1.sm.mk 55 FVCKTCSRAFPTFQALGGHRTSH 77 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Zpz_sc01146.1.g00270.1.sm.mk 112 HECPICGLGFEMGQALGGHMRRH 134 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-5 | 51 | 81 | No hit | No description |
Pfam | PF13912 | 1.5E-10 | 55 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-5 | 109 | 137 | No hit | No description |
Pfam | PF13912 | 4.7E-11 | 112 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKHPREEQEV SLALSLSTDS SASSSTSSTG GGAASSNKRA RRRGPVKATS GEGDFVCKTC 60 SRAFPTFQAL GGHRTSHLRG RHGLELGVVG AKALRQHRAA DTANSAKPKQ QHECPICGLG 120 FEMGQALGGH MRRHREEMAA GDDWVWRPQE KIVTAEPPVL LQLFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01146.1.g00270.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198423.1 | 5e-66 | zinc finger protein ZAT8-like | ||||
TrEMBL | A0A1E5V1M3 | 8e-68 | A0A1E5V1M3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00894.1.p | 2e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 4e-22 | C2H2 family protein |