PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01146.1.g00220.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 360aa MW: 37700.9 Da PI: 10.1318

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01146.1.g00220.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2e-38	107	167	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+++ Zpz_sc01146.1.g00220.1.am.mk 107 PEPGLKCPRCESTNTKFCYFNNYSLKQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRTK 167 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-37	91	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	111	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	111	165	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	113	149	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MVFSSVPVYL DPPNWNQRQQ QEQQQAHHGQ LQSGGGGGGG GGGVEPHRHQ QHQLPPVPPP 60 GALIAPRPDM AMVGAASGGG GGPTSGGSAV RPGSMTERAR LERIPQPEPG LKCPRCESTN 120 TKFCYFNNYS LKQPRHFCKT CRRYWTRGGT LRNVPVGGGC RRNKRTKSSK SNSSSAASAS 180 ATGGTSSSTS STATGGSSAA ATAGIMPPQT QLPFLASSLY QFGGDHYSAG ASRLGFSGLS 240 SLDPVDYQLG TGGGAGTAIG LDHWSMPQIQ QFPFFSRPDG VPPPMPGIYP FDAEGGGDAA 300 SFAGQMLPGS SGLITQLASV KMEDNNPQQR AIYSSACNPR SELARAGRRR REWLASQRSP

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MVFSSVPVYL DPPNWNQRQQ QEQQQAHHGQ LQSGGGGGGG GGGVEPHRHQ QHQLPPVPPP  60
GALIAPRPDM AMVGAASGGG GGPTSGGSAV RPGSMTERAR LERIPQPEPG LKCPRCESTN  120
TKFCYFNNYS LKQPRHFCKT CRRYWTRGGT LRNVPVGGGC RRNKRTKSSK SNSSSAASAS  180
ATGGTSSSTS STATGGSSAA ATAGIMPPQT QLPFLASSLY QFGGDHYSAG ASRLGFSGLS  240
SLDPVDYQLG TGGGAGTAIG LDHWSMPQIQ QFPFFSRPDG VPPPMPGIYP FDAEGGGDAA  300
SFAGQMLPGS SGLITQLASV KMEDNNPQQR AIYSSACNPR SELARAGRRR REWLASQRSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01146.1.g00220.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582401	1e-116	KC582401.1 Sorghum bicolor dof4 protein (dof4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792577.1	1e-127	dof zinc finger protein DOF2.4-like
TrEMBL	A0A3L6SDN7	1e-132	A0A3L6SDN7_PANMI; Dof zinc finger protein DOF2.4-like
STRING	Pavir.J14743.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	3e-42	OBF-binding protein 3