PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01145.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 272aa    MW: 29266.2 Da    PI: 7.2067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01145.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12111156454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RRd++N  f  Lr  +P+       +++Ka+ L  A  YI +L
  Zpz_sc01145.1.g00140.1.am.mk 111 SHVEAERKRRDKLNRLFCDLRAAVPTV-----SRMDKASLLADAASYITEL 156
                                   799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-12110161No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-16111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-10111156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDGLLSPCSS FSPPSPASFS HVGNPVIEFA SCEVPEQWLH DVVAPKYEGY DHGDEELVWP  60
VGCTHSPASE HSEKPPPQQQ DPSVTAPAQR SAGIKRRARK PGPRQDVPFV SHVEAERKRR  120
DKLNRLFCDL RAAVPTVSRM DKASLLADAA SYITELRARV ARLEAEAKRA GPKTRPWEPV  180
TASRGGAVEE AVEVRMVGSD AAAVRVLGGA PHAPARLMDA LRALDLNVQH ACVSRVNGVT  240
VQDVVVDVPA RLLDGEGLRT LLAQMLLGSG CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-16110166763Transcription factor MYC2
5gnj_B4e-16110166763Transcription factor MYC2
5gnj_E4e-16110166763Transcription factor MYC2
5gnj_F4e-16110166763Transcription factor MYC2
5gnj_G4e-16110166763Transcription factor MYC2
5gnj_I4e-16110166763Transcription factor MYC2
5gnj_M4e-16110166763Transcription factor MYC2
5gnj_N4e-16110166763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRD
2116121RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01145.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404956.14e-88transcription factor MYC2
TrEMBLA0A3B6KLV33e-86A0A3B6KLV3_WHEAT; Uncharacterized protein
TrEMBLA0A446T9B73e-86A0A446T9B7_TRITD; Uncharacterized protein
STRINGTraes_5DL_5DA6E1A09.11e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-16bHLH family protein