PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01135.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 383aa    MW: 40550.2 Da    PI: 5.4788
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01135.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.63.2e-3275174297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g ++
  Zpz_sc01135.1.g00140.1.sm.mk  75 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPSF 155
                                   69*************************9977778***************************************88899*** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   sf+++h+q ife+++ iW+
  Zpz_sc01135.1.g00140.1.sm.mk 156 SFRSPHEQAIFEIARTIWR 174
                                   ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-2976173IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MFPMVDDPSA AAGGGAMVSS SFPDADAYGN GNGDSEDIDF PAGPNSHASF SAAPATTAAT  60
SAGAGGPGSG ERRALFQRLW TDEDEIVILR AFAEFTAQRG TAFASHQYDT TPFYEDMRGR  120
LQTGFTKSQL VEKLRRLKRK YRNCVDRLRV AGPSFSFRSP HEQAIFEIAR TIWRPGSDKH  180
GRDSDDEGNE DALAVDAAAA AAAAAAGARV NGDSARSPSS RSRRGRRRRK GDFPATDTAE  240
ALPPAPMPAM TTEDALPSFP QPTAMDGGTI TMDPAAAGLP AVLSAAATVA TPGTAENPIL  300
ASLFKEMIRS MLNISSSSAP LGLEPPPPAI PGMPMDGEKW RQQRILELEV YLRRIALLQD  360
QAQAALEELR SAPPHHGAGG MNT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01135.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876801e-129BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542301e-129EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285201e-129JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-156probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-155A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-155A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-31DNA-binding storekeeper protein-related transcriptional regulator